View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_8 (Length: 521)

Name: NF10104A_low_8
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_8
NF10104A_low_8
[»] chr2 (1 HSPs)
chr2 (21-521)||(36166448-36166948)


Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 21 - 521
Target Start/End: Complemental strand, 36166948 - 36166448
Alignment:
21 cattatgggaggggattactcgctttaggttcttcctagggatgtcttggaccattgctcttaggcgttgaaggaaggagatggtgattggggaccgaag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
36166948 cattatgggaggggattactcgctttaggttcttcctagggatgtcttgggccattgctcttaggtgttgaaggaaggagatggtgattggggaccgaag 36166849  T
121 ccatttagatttaataatcattagttgaataatagaaatttcaaaaggggtggaggaggaggcttgggaagagtttcaagtgattgggtagatgagtttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||    
36166848 ccatttagatttaataatcattagttgaataatagaaatttcaaaaggg-tggaggaggaggcttgggaagagtttcaagtgatcgggtggatgagtttt 36166750  T
221 gtgttgaaagaaaaattaaagagattcaaaggagtgattaaagagtggaataaggtggaatatgggaagttggaggataggctagtgttgcttatggagg 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
36166749 gtgttgaaagaaaaattaaagagattcaaaggagtgattaaagagtggaataaggtggaatatgagaagttggaggatatgctagtgttgcttatggagg 36166650  T
321 aaattgcaaagttgtgagaagggagggagggagtttaacgcatgaggaggtggaggtgaggaaaattaaatttggggagctatggagacttttgagaagt 420  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36166649 aaattgcaaagttgtgagaggggagggagggattttaacgcatgcggaggtggaggtgaggaaaattaaatttggggagctatggagacttttgagaagt 36166550  T
421 aaagatggtttgttagttcaacgatctaagtctaaatggcttaaaggaacggatgcaaactctaaa-ctttttcataattgtattaaaactagaaataga 519  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||  ||||||||||    
36166549 aaatatggtttgttagttcaacgatctaagtctaaatggcttaaaggaacgaatgcaaactctaaatttttttcataattgtattaaagatagaaataga 36166450  T
520 ag 521  Q
    ||    
36166449 ag 36166448  T

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