View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_80 (Length: 358)
Name: NF10104A_low_80
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 36170710 - 36170376
Alignment:
| Q |
5 |
tgtcgaacaaaatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattg |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170710 |
tgtcgaacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattg |
36170611 |
T |
|
| Q |
105 |
ttatttcctttgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccgtttgcctaaccaactc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36170610 |
ttatttcctttgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccatttgcctaaccaactc |
36170511 |
T |
|
| Q |
205 |
atctccaaaggcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttgatttcactagcctgataaaagtcgacaccgcatcctcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170510 |
atctccaaaggcaatattctgaatgaaccctattgaattcacctgaattgcttcctcctttgatttcactagcctgataaaagtcgacaccgcatcctcc |
36170411 |
T |
|
| Q |
305 |
tcaaccataaatctcttaacttcctcaacaccaac |
339 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
36170410 |
tcaaccatgaatctcttaacttcctcaacaccaac |
36170376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 1286332 - 1286394
Alignment:
| Q |
5 |
tgtcgaacaaaatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
67 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286332 |
tgtcgaacataatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
1286394 |
T |
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