View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_84 (Length: 355)

Name: NF10104A_low_84
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_84
NF10104A_low_84
[»] chr6 (3 HSPs)
chr6 (24-349)||(25012562-25012887)
chr6 (35-188)||(33520528-33520681)
chr6 (36-103)||(21091484-21091551)
[»] chr2 (4 HSPs)
chr2 (64-207)||(40637367-40637511)
chr2 (25-190)||(25503167-25503332)
chr2 (293-346)||(40637268-40637321)
chr2 (229-272)||(40637306-40637349)
[»] chr5 (4 HSPs)
chr5 (25-190)||(8732575-8732740)
chr5 (131-205)||(32470114-32470188)
chr5 (36-146)||(32470204-32470315)
chr5 (78-179)||(9763097-9763199)
[»] chr3 (3 HSPs)
chr3 (64-188)||(5578939-5579063)
chr3 (65-103)||(54298634-54298672)
chr3 (62-103)||(34147481-34147522)
[»] chr4 (1 HSPs)
chr4 (317-349)||(38282811-38282843)
[»] chr7 (1 HSPs)
chr7 (62-103)||(21868232-21868273)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 349
Target Start/End: Original strand, 25012562 - 25012887
Alignment:
Q  24 cacattcctgggaatagaggttgggaaagaaaaatatatatgtttggtagcaaggaacaaaaataatatgcctaggaata-ttaatgcccaggaatctac 122  Q
    ||||||| ||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  25012562 cacattcttgggaatagaggttgggaaagaaaaatacctacgtttggtagaaaggaacaaaaataatatgcctaagaataattaatgtccaggaatctac 25012661  T
Q  123 ttaccttacattctagtcatttttattcccatgaaaaaaggatgggaaaattatatttccaggaaaagagtgcccacattcttgannnnnnnnnnnnnnn 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||                   
T  25012662 ttaccttacattctagtcatttttattcccatgaaaaagggatgggaaaattatattcccaggaaaagagtgcccacattcttga-ttttttttattttt 25012760  T
Q  223 nnnnnncatttaaagctaaacaaattatcctcacagccaaccacattcttgannnnnnnnnnnngaaagaagccaaccacgttcttgataaacactcata 322  Q
          ||||||||||||||||||||||||| |||||||||||| |||||||            |||||||||||||||||||||||||||| |||||||    
T  25012761 tattttcatttaaagctaaacaaattatccttacagccaaccacgttcttgatttttgttttttgaaagaagccaaccacgttcttgataaaaactcata 25012860  T
Q  323 aatatgcccattttactattgtgttcc 349  Q
    |||||||||||||||||||||||||||    
T  25012861 aatatgcccattttactattgtgttcc 25012887  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 33520681 - 33520528
Alignment:
Q  35 gaatagaggttgggaaagaaaaatatatatgtttggtagcaaggaacaaaaataatatgcctaggaata-ttaatgcccaggaatctacttaccttacat 133  Q
    |||||||| |||||||| || |||   |||||||||||| ||||||||||| ||||||||||| ||||| |||||   ||||||| | |||| || ||||    
T  33520681 gaatagagcttgggaaaaaataattcctatgtttggtagaaaggaacaaaa-taatatgcctacgaataattaatattcaggaatatgcttaactcacat 33520583  T
Q  134 tctagtcatttttattcccatgaaaaaaggatgggaaaattatatttccaggaaa 188  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  33520582 tctaatcatttttattcccatgaaaaaaggatggaaaaattatattcccaggaaa 33520528  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 21091484 - 21091551
Alignment:
Q  36 aatagaggttgggaaagaaaaatatatatgtttggtagcaaggaacaaaaataatatgcctaggaata 103  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||    
T  21091484 aatagaggttgggaaagaacaatatctatgtttggtagaaaggaacaaaaataatatacctaggaata 21091551  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 40637511 - 40637367
Alignment:
Q  64 tgtttggtagcaaggaacaaaaataatatgcctaggaatatt-aatgcccaggaatctacttaccttacattctagtcatttttattcccatgaaaaaag 162  Q
    |||||||||| ||||||||||| |||||||| |||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  40637511 tgtttggtagaaaggaacaaaattaatatgcttaggaataatcaatacccaagaatctacttaccttacattctagtcatttttattcccatgaaaaagg 40637412  T
Q  163 gatgggaaaattatatttccaggaaaagagtgcccacattcttga 207  Q
    |||||||||||||||||  |||||||||||||||||| |||||||    
T  40637411 gatgggaaaattatattctcaggaaaagagtgcccactttcttga 40637367  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 25503332 - 25503167
Alignment:
Q  25 acattcctgggaatagaggttgggaaagaaaaatatatatgtttggtagcaaggaacaaaaataatatgcctaggaata-ttaatgcccaggaatctact 123  Q
    ||||||| |||||||||| |||||||| || |||  ||||||||||||| ||||||||||| |||||||||||| |||| |||||  |||||||| | ||    
T  25503332 acattccagggaatagagcttgggaaaaaataattcatatgtttggtagaaaggaacaaaa-taatatgcctagaaataattaatatccaggaatattct 25503234  T
Q  124 taccttacattctagtcatttttattcccatgaaaaaaggatgggaaaattatatttccaggaaaag 190  Q
    || || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25503233 taactcacattctaatcatttttattcccatgaaaaaaggatgggaaaattatattcccaggaaaag 25503167  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 40637321 - 40637268
Alignment:
Q  293 agccaaccacgttcttgataaacactcataaatatgcccattttactattgtgt 346  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  40637321 agccaaccacgttctttataaaaactcataagtatgcccattttactgttgtgt 40637268  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 40637349 - 40637306
Alignment:
Q  229 catttaaagctaaacaaattatcctcacagccaaccacattctt 272  Q
    |||||||||||||||||||||| ||||||||||||||| |||||    
T  40637349 catttaaagctaaacaaattattctcacagccaaccacgttctt 40637306  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 8732575 - 8732740
Alignment:
Q  25 acattcctgggaatagaggttgggaaagaaaaatatatatgtttggtagcaaggaacaaaaataatatgcctaggaata-ttaatgcccaggaatctact 123  Q
    ||||||| |||||||||| |||||||| || |||  ||||||||||||| ||||||||||| |||||||||||| |||| |||||  |||||||| | ||    
T  8732575 acattccagggaatagagcttgggaaaaaataattcatatgtttggtagaaaggaacaaaa-taatatgcctagaaataattaatatccaggaatattct 8732673  T
Q  124 taccttacattctagtcatttttattcccatgaaaaaaggatgggaaaattatatttccaggaaaag 190  Q
    || || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8732674 taactcacattctaatcatttttattcccatgaaaaaaggatgggaaaattatattcccaggaaaag 8732740  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 32470188 - 32470114
Alignment:
Q  131 cattctagtcatttttattcccatgaaaaaaggatgggaaaattatatttccaggaaaagagtgcccacattctt 205  Q
    |||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||||| |||||    
T  32470188 cattatagtcatttttatttccatgaaaaagggatgggaaaattacatttccaggaaaagagagcccacgttctt 32470114  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 32470315 - 32470204
Alignment:
Q  36 aatagaggttgggaaagaaaaatatatatgtttggtagcaaggaacaaaaataatatgcctaggaat-attaatgcccaggaatctacttaccttacatt 134  Q
    ||||||| |||||||| || |||  || |||||||||| |||||||||||||||||| ||||||||| |||||| |||| | ||||||||| || |||||    
T  32470315 aatagagattgggaaaaaagaattcatgtgtttggtagaaaggaacaaaaataatatacctaggaataattaatacccacggatctacttaactcacatt 32470216  T
Q  135 ctagtcattttt 146  Q
    |||||| |||||    
T  32470215 ctagtctttttt 32470204  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 9763199 - 9763097
Alignment:
Q  78 gaacaaaaataatatgcctaggaata-ttaatgcccaggaatctacttaccttacattctagtcatttttattcccatgaaaaaaggatgggaaaattat 176  Q
    ||||||| |||| |||| || ||||| |||||| | | ||||||||||| || ||||||||| |||||| ||||||||  |||| |||||||||||||||    
T  9763199 gaacaaacataagatgcttatgaataattaatgtctatgaatctacttaactcacattctagacattttcattcccatataaaagggatgggaaaattat 9763100  T
Q  177 att 179  Q
    |||    
T  9763099 att 9763097  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 5578939 - 5579063
Alignment:
Q  64 tgtttggtagcaaggaacaaaaataatatgcctaggaata-ttaatgcccaggaatctacttaccttacattctagtcatttttattcccatgaaaaaag 162  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||| |||| |||| | |||| || |||||||| ||||||||||||||||||||||||    
T  5578939 tgtttggtagaaaggaacaaaa-taatatgcctaggaataattaatacccatgaatatgcttaactcacattctaatcatttttattcccatgaaaaaag 5579037  T
Q  163 gatgggaaaattatatttccaggaaa 188  Q
    ||||||||||||||||| ||| ||||    
T  5579038 gatgggaaaattatattcccaagaaa 5579063  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 54298634 - 54298672
Alignment:
Q  65 gtttggtagcaaggaacaaaaataatatgcctaggaata 103  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  54298634 gtttggtagaaaggaacaaaaataatatgcctaggaata 54298672  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 34147481 - 34147522
Alignment:
Q  62 tatgtttggtagcaaggaacaaaaataatatgcctaggaata 103  Q
    |||||||||||| | |||||||||||||||| ||||||||||    
T  34147481 tatgtttggtagaagggaacaaaaataatatacctaggaata 34147522  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 38282811 - 38282843
Alignment:
Q  317 ctcataaatatgcccattttactattgtgttcc 349  Q
    |||||||||||||||||||||||||||||||||    
T  38282811 ctcataaatatgcccattttactattgtgttcc 38282843  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 21868273 - 21868232
Alignment:
Q  62 tatgtttggtagcaaggaacaaaaataatatgcctaggaata 103  Q
    |||||||||||| | |||||||||||||||| ||||||||||    
T  21868273 tatgtttggtagaagggaacaaaaataatatacctaggaata 21868232  T

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