View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_85 (Length: 355)

Name: NF10104A_low_85
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_85
NF10104A_low_85
[»] chr2 (27 HSPs)
chr2 (12-349)||(39215557-39215894)
chr2 (16-346)||(39161771-39162104)
chr2 (16-346)||(39207090-39207423)
chr2 (12-151)||(39370033-39370172)
chr2 (12-344)||(39388918-39389255)
chr2 (12-131)||(39192439-39192558)
chr2 (12-131)||(39198119-39198238)
chr2 (176-343)||(39192266-39192436)
chr2 (176-343)||(39197946-39198116)
chr2 (176-278)||(39222932-39223037)
chr2 (12-151)||(39414761-39414900)
chr2 (12-127)||(39468264-39468379)
chr2 (209-346)||(39370254-39370394)
chr2 (12-100)||(39137807-39137895)
chr2 (12-131)||(39222810-39222929)
chr2 (17-130)||(39473409-39473522)
chr2 (12-127)||(39397852-39397967)
chr2 (12-130)||(39459177-39459295)
chr2 (205-342)||(39381275-39381412)
chr2 (16-131)||(39381510-39381625)
chr2 (15-130)||(39421832-39421947)
chr2 (205-250)||(39421688-39421733)
chr2 (13-111)||(39494461-39494559)
chr2 (205-242)||(39468448-39468485)
chr2 (12-64)||(39152509-39152561)
chr2 (284-337)||(39223101-39223154)
chr2 (198-242)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (18-127)||(16113230-16113339)
chr6 (205-242)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (12-100)||(19807757-19807845)
chr7 (206-302)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (205-346)||(33561135-33561281)
chr5 (210-250)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (221-336)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 39215557 - 39215894
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215557 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 39215656  T
Q  112 gaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcggg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215657 gaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcggg 39215756  T
Q  212 taaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgttta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215757 taaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgttta 39215856  T
Q  312 aaaatatttttaatcatgttaatgttttatgtctttgt 349  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39215857 aaaatatttttaatcatgttaatgttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 39161771 - 39162104
Alignment:
Q  16 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 115  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39161771 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39161870  T
Q  116 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggt 212  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||   ||| |||| | |||| |||    
T  39161871 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39161970  T
Q  213 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 312  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39161971 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39162070  T
Q  313 aaatatttttaatcatgttaatgttttatgtctt 346  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39162071 acacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 39207423 - 39207090
Alignment:
Q  16 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 115  Q
    |||| |||||||||||||||||||| ||||| |||   |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| |||    
T  39207423 agaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaagg 39207324  T
Q  116 acaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggt 212  Q
    |||||||||||||||||||| |||| |||| ||||| |||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| |||    
T  39207323 acaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggt 39207224  T
Q  213 aaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaa 312  Q
    |||||||||| ||||||||| ||||||||||| ||| | || ||| |||||| ||||||||||||| | |||||  | || ||||||| || || |||||    
T  39207223 aaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaa 39207124  T
Q  313 aaatatttttaatcatgttaatgttttatgtctt 346  Q
    | |  |||||| ||||||||||||| ||||||||    
T  39207123 acacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 39370033 - 39370172
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | |||||||||||||||||||    
T  39370033 aaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttg 39370132  T
Q  112 gaggacaagtcaaggatcctaagttaaagttgaaaaaatt 151  Q
    || |||||||||||| || | ||| |||| |||| |||||    
T  39370133 gaagacaagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 39389255 - 39388918
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    |||||| ||| |||| || |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| ||||||||||    
T  39389255 aaagagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39389156  T
Q  112 gaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga---agaaacacaatc 208  Q
     ||| |||||||| |||||| ||| |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| ||||    |||| | ||||    
T  39389155 aagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatc 39389056  T
Q  209 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca--atttttataacccgatctacatagtt 306  Q
     |||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |   |||||||| |  ||||||| || ||    
T  39389055 cggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaatt 39388956  T
Q  307 gtttaaaaatatttttaatcatgttaatgttttatgtc 344  Q
       || |||  |||||||||||||||||||| ||||||    
T  39388955 ccatagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 39192558 - 39192439
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39192558 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39192459  T
Q  112 gaggacaagtcaaggatcct 131  Q
     ||||| |||||||||||||    
T  39192458 aaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 39198238 - 39198119
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39198238 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39198139  T
Q  112 gaggacaagtcaaggatcct 131  Q
     ||||| |||||||||||||    
T  39198138 aaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  176 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 272  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  273 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 343  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  176 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 272  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  273 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 343  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  176 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 272  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  273 tgatga 278  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 39414900 - 39414761
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||||||||||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| |||||||    
T  39414900 aaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttg 39414801  T
Q  112 gaggacaagtcaaggatcctaagttaaagttgaaaaaatt 151  Q
     ||||||||| ||||||||| ||| |||| || |||||||    
T  39414800 aaggacaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 39468264 - 39468379
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||| ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| |||    
T  39468264 aaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattg 39468363  T
Q  112 gaggacaagtcaagga 127  Q
     |||||||||||||||    
T  39468364 aaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  209 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 305  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  306 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 346  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 39137807 - 39137895
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 100  Q
    |||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137807 aaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 39222810 - 39222929
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||||||||||||||||| ||| |||||  ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  |||||    
T  39222810 aaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttg 39222909  T
Q  112 gaggacaagtcaaggatcct 131  Q
     |||||||||||||||||||    
T  39222910 aaggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 39473522 - 39473409
Alignment:
Q  17 gaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagga 116  Q
    |||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| ||||    
T  39473522 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaagga 39473423  T
Q  117 caagtcaaggatcc 130  Q
     ||||| |||||||    
T  39473422 gaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 39397967 - 39397852
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||| |||||| |||||| |||||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| |||    
T  39397967 aaagataagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttg 39397868  T
Q  112 gaggacaagtcaagga 127  Q
     ||| | |||||||||    
T  39397867 caggtcgagtcaagga 39397852  T

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Target: chr2; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 39459177 - 39459295
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||||||||||||||||| || | |||||||| | ||     |||||||||||||||||||||  || || ||| ||||||||||||| ||||| ||||    
T  39459177 aaagagaagcaatttgaagaacagcggaaagaattcgatgctgaagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttg 39459276  T
Q  112 gaggacaagtcaaggatcc 130  Q
     ||||||||||||||||||    
T  39459277 aaggacaagtcaaggatcc 39459295  T

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Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 304  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  305 ttgtttaaaaatatttttaatcatgttaatgttttatg 342  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 39381625 - 39381510
Alignment:
Q  16 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 115  Q
    ||||| ||||||||| |||   ||||||||  || | |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |    
T  39381625 agaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaag 39381526  T
Q  116 acaagtcaaggatcct 131  Q
    ||||| ||||||||||    
T  39381525 acaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  15 gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 114  Q
    |||||| ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  |||||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  115 gacaagtcaaggatcc 130  Q
     || ||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 250  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 39494559 - 39494461
Alignment:
Q  13 aagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 111  Q
    ||||||| ||||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494559 aagagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaa 242  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 39152509 - 39152561
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataa 64  Q
    ||||||||||||||||||  |||||||||||| || |||| ||||||||||||    
T  39152509 aaagagaagcaatttgaaaaacggtggaaagagctcgagtcaaaagagaataa 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  284 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 337  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  198 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 242  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 16113230 - 16113339
Alignment:
Q  18 aagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggac 117  Q
    ||||||||||||| ||||||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||    
T  16113230 aagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtac 16113329  T
Q  118 aagtcaagga 127  Q
    ||||||||||    
T  16113330 aagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaa 242  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 19807757 - 19807845
Alignment:
Q  12 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 100  Q
    |||||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807757 aaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  206 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 302  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  205 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 300  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  301 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 346  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  210 ggtaaatgttcttattcatctagtttattgaaagagtttca 250  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 336
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  221 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 317  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  318 tttttaatcatgttaatgt 336  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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