View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_9 (Length: 520)
Name: NF10104A_low_9
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 118 - 441
Target Start/End: Complemental strand, 29262360 - 29262022
Alignment:
| Q |
118 |
tattaaaccaataactcatacaaaattatagatatta---gataacaaaaatatcagcaacaataagttttttgttggggaccactttccacctactact |
214 |
Q |
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| T |
29262360 |
tattaaaccaataactcatacaaaattatagatattattagataacaaaaatatcagcaacaataagttttttgttggggaccactttcaacctactact |
29262261 |
T |
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| Q |
215 |
tactaccgcaaagctacaaagtacaaacacagcatatagggagatcagcaacatgttaagtc-----------------ctcacaatatgttaaagtcaa |
297 |
Q |
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| T |
29262260 |
tactaccgcaaagctactaagtacaaacacagcatatagggagatcagtaacatgttaagtcattccatatgttaagtcctcacaatatgttaaagtcag |
29262161 |
T |
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| Q |
298 |
ccaagttgtatttctttctagagtacaaataataataaaggactttattgattccatatccaccttatagtatataaaaggatgaagaggttattcaatg |
397 |
Q |
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| T |
29262160 |
ccaagttgtatttctttctagagtacaaataataataaaggactttattgattccatatccacct-----tatataaaaggatgaagaggttattcaatg |
29262066 |
T |
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| Q |
398 |
aggtgccaagaaagatgtacaaaaattacaccaaatgataggta |
441 |
Q |
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| T |
29262065 |
aggtgccaagaaagatgtacaaaaattacaccaaatgataggta |
29262022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 29258423 - 29258548
Alignment:
| Q |
59 |
aaagctactaccaagatgtttacaaagcataatgaaattacacaagga---aggttgacaattattaaaccaataactcatacaaaattatagatattag |
155 |
Q |
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||||||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
29258423 |
aaagctactaccaagatgtctacaaagcatattgaaattatacaaggaggaaggttgacaataaataaaccaataactcatacaaaattatagagattag |
29258522 |
T |
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| Q |
156 |
ataacaaaaatatcagcaacaataag |
181 |
Q |
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| T |
29258523 |
ataacaaaaatatcagcaataataag |
29258548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 29286658 - 29286540
Alignment:
| Q |
65 |
actaccaagatgtttacaaagcataatgaaattacacaaggaag---gttgacaattattaaaccaataactcatacaaaattatagatattagataaca |
161 |
Q |
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||||||||||||| |||| |||||| |||||||||||||||||| |||| |||| | |||||||||||||||| ||||||||||||||| | |||||| |
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| T |
29286658 |
actaccaagatgtctacatagcatattgaaattacacaaggaagaaggttggcaataagtaaaccaataactcatgcaaaattatagatatca-ataaca |
29286560 |
T |
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| Q |
162 |
aaaatatcagcaacaataag |
181 |
Q |
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|||||||| ||||||||||| |
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| T |
29286559 |
aaaatatccgcaacaataag |
29286540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 35235067 - 35234991
Alignment:
| Q |
105 |
gaaggttgacaattattaaaccaataactcatacaaaattatagatattagataacaaaaatatcagcaacaataag |
181 |
Q |
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|||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35235067 |
gaaggttggcaataagtaaaccaataactcatacaaaattatagatatcagataacaaaaatatcagcaacaataag |
35234991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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