View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_92 (Length: 346)
Name: NF10104A_low_92
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_92 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 5898630 - 5898292
Alignment:
| Q |
8 |
gagatgaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
107 |
Q |
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| T |
5898630 |
gagaagaagaaccagagctgcttagatcagaagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattctt |
5898531 |
T |
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| Q |
108 |
atggtcatagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
207 |
Q |
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| T |
5898530 |
atggtcatagttccaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaa |
5898431 |
T |
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| Q |
208 |
ggaaaagctaaaatgatttttgtgattgtagataagtacctttcttgttctggtttactcaatagattaacttttagctggacttattagatgctaaaca |
307 |
Q |
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| T |
5898430 |
ggaaaagctaaaatgatttttgtgattgtagataagtacctttcttgttctggtttactcaatagattaactattagttggacttattagatgctaaaca |
5898331 |
T |
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| Q |
308 |
tggttaattgtctaggattcaagtctaaaaattcttgga |
346 |
Q |
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| T |
5898330 |
tggttaattgtctatgattcaagtctaaaaattcttgga |
5898292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 5860445 - 5860114
Alignment:
| Q |
13 |
gaagaaccagagctgcttatatcaggagaattgttaatgagggagtttgaagaatgacgcaggccgacttgctgcagttgctgcaacagattcttatggt |
112 |
Q |
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| T |
5860445 |
gaagaaccagagctgcttagatcaggagaattgttaatgagggagtttgaagaatgacacaggccgacttgctacagttgctgcaacagattcttatggt |
5860346 |
T |
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| Q |
113 |
catagttctaacgaatgtagctatccttgatttaggatgttaacaccattaattttttccttaacctttgaacctgtttggtcaatggtcatcaaggaaa |
212 |
Q |
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| T |
5860345 |
catagctccaacgaatgtagctatccttgatttaggatgttaacaccattcattttttccttaacctttgaaccagtttggtcaatgatcatcaaggaaa |
5860246 |
T |
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| Q |
213 |
agctaaaatgatttttgtgattgtagataagtacctttcttgttctggtttactcaatagattaacttttagctggacttattagatgctaaacatggtt |
312 |
Q |
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| T |
5860245 |
agctaaaatga-ttttgtgattgtagataactacctttctagttctggtttaatcaataga-taacttttagttggacttattagatgctaaacaatgtt |
5860148 |
T |
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| Q |
313 |
aattgtctaggattcaagtctaaaaattcttgga |
346 |
Q |
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| T |
5860147 |
aattgtctatgattctagtctaaaaattcttgga |
5860114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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