View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_94 (Length: 342)
Name: NF10104A_low_94
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_94 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 42849515 - 42849841
Alignment:
| Q |
16 |
atgaatgaaattaaccccgcagcctctggccaaaacacatgatatatataatcataaacatatcatcacactcaatccatcatgattctgaattcttcaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849515 |
atgaatgaaattaaccccgcagcctctggccaaaacacatgatatatataatcataaacatatcatcacactcaatccatcatgattctgaattcttcaa |
42849614 |
T |
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| Q |
116 |
aactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaacatcctcttcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849615 |
aactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaacatcctcttcaa |
42849714 |
T |
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| Q |
216 |
actttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccataagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849715 |
actttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccataagc |
42849814 |
T |
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| Q |
316 |
tttatcaaatcctccaaactcaataat |
342 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42849815 |
tttatcaaatcctccaaactcaataat |
42849841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 87 - 341
Target Start/End: Original strand, 42846599 - 42846853
Alignment:
| Q |
87 |
tcaatccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaa |
186 |
Q |
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| T |
42846599 |
tcaatccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaa |
42846698 |
T |
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| Q |
187 |
tcccccagttttttcaacatcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846699 |
tcccccagttttttcaacatcctcttcaaactttttggcgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatt |
42846798 |
T |
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| Q |
287 |
tttcttcctctccccctgattccataagctttatcaaatcctccaaactcaataa |
341 |
Q |
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|||| |||||||||||||||||||| | | | |||||||| ||||||||||||| |
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| T |
42846799 |
tttcctcctctccccctgattccattaacgtaatcaaatctcccaaactcaataa |
42846853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 42839795 - 42840045
Alignment:
| Q |
91 |
tccatcatgattctgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatccc |
190 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
42839795 |
tccatcatgattctgaactcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcactttacattcttcaatggacttagaatccc |
42839894 |
T |
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| Q |
191 |
ccagttttttcaacatcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttc |
290 |
Q |
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||| ||||||||||||||||||||||| |||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42839895 |
ccaactttttcaacatcctcttcaaactctttggtgttatgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttc |
42839994 |
T |
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| Q |
291 |
ttcctctccccctgattccataagctttatcaaatcctccaaactcaataa |
341 |
Q |
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| T |
42839995 |
ttcctctccccctgattccattagcgctatcaaatcctccaaactcaataa |
42840045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 299
Target Start/End: Original strand, 33931390 - 33931585
Alignment:
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
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||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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| T |
33931390 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
33931489 |
T |
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| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctcc |
299 |
Q |
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||||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| |
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| T |
33931490 |
catcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctcc |
33931585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 299
Target Start/End: Original strand, 33938195 - 33938390
Alignment:
| Q |
104 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
203 |
Q |
| |
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||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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| T |
33938195 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
33938294 |
T |
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| Q |
204 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctcc |
299 |
Q |
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||||||||||||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||||||||| |||| ||||||||| |
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| T |
33938295 |
catcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctcc |
33938390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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