View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_97 (Length: 341)

Name: NF10104A_low_97
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_97
NF10104A_low_97
[»] chr8 (1 HSPs)
chr8 (7-294)||(43021144-43021431)
[»] chr4 (1 HSPs)
chr4 (150-290)||(13675644-13675784)
[»] chr6 (1 HSPs)
chr6 (150-290)||(19964935-19965075)
[»] chr3 (2 HSPs)
chr3 (150-252)||(50805724-50805826)
chr3 (150-252)||(50870051-50870153)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 43021431 - 43021144
Alignment:
Q  7 atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43021431 atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtgg 43021332  T
Q  107 aagaatctaaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaa 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43021331 aagaatctaaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaa 43021232  T
Q  207 tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatccaaaatct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43021231 tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaaatct 43021144  T

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Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
Q  150 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 249  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | ||||    
T  13675644 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat 13675743  T
Q  250 gctatctctggctatatatgcccccttcaaaagtatccaaa 290  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  13675744 gctatctctatctatatatgcccccttcaaaagtatccaaa 13675784  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
Q  150 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 249  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | ||||    
T  19965075 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat 19964976  T
Q  250 gctatctctggctatatatgcccccttcaaaagtatccaaa 290  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  19964975 gctatctctatctatatatgcccccttcaaaagtatccaaa 19964935  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
Q  150 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 249  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | ||||    
T  50805826 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat 50805727  T
Q  250 gct 252  Q
    |||    
T  50805726 gct 50805724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
Q  150 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 249  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | ||||    
T  50870051 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat 50870150  T
Q  250 gct 252  Q
    |||    
T  50870151 gct 50870153  T

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