View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_98 (Length: 335)

Name: NF10104A_low_98
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_98
NF10104A_low_98
[»] chr1 (5 HSPs)
chr1 (4-330)||(9336853-9337173)
chr1 (133-330)||(9363760-9363951)
chr1 (4-80)||(9363956-9364032)
chr1 (157-256)||(9243178-9243277)
chr1 (4-56)||(9243012-9243063)
[»] scaffold0690 (2 HSPs)
scaffold0690 (10-255)||(986-1234)
scaffold0690 (282-327)||(926-971)
[»] chr6 (2 HSPs)
chr6 (10-255)||(15910871-15911119)
chr6 (282-327)||(15911134-15911179)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 330
Target Start/End: Complemental strand, 9337173 - 9336853
Alignment:
Q  4 aagcacagttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataatttacaaaaattcttttaaatctgaac 103  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  9337173 aagcacagttgagccaatcattgcacctacaaattaaacattcaatatccttataaaattctcagcaacataatttattaaaattcttttaaatctgaac 9337074  T
Q  104 caaacccaaaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcc 203  Q
    ||| ||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9337073 caaccccaaaaacaaaccaaatgaagtagaaaagtgaatttatctcacctgcagaggataaaataatcttctttgatttgttcttgcatttaaaacatcc 9336974  T
Q  204 tttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaa 303  Q
     ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||| || | |   ||||||||||||||||||||    
T  9336973 attgtcaagatttgtttccgaccatgataatgagattgaggtttgtagtatcgtatacccatt---agaatattctg---ccggaagaataaggggtgaa 9336880  T
Q  304 actcgttgagacaatttggtgcagaat 330  Q
    |||||||||||||||||||||||||||    
T  9336879 actcgttgagacaatttggtgcagaat 9336853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 133 - 330
Target Start/End: Complemental strand, 9363951 - 9363760
Alignment:
Q  133 aaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgata 232  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9363951 aaaagtgaatttatctcacctgcagaggataaaattatcttctttgatttgttcttgcatttaaaacatccattgtcaagatttgtttccgaccatgata 9363852  T
Q  233 atgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaat 330  Q
    |||||||||| |||||||||||||||||||||||   |||| || | |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  9363851 atgagattgaggtttgtcgtatcgtatacccatt---agaatattctg---ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaat 9363760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 9364032 - 9363956
Alignment:
Q  4 aagcacagttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataattta 80  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  9364032 aagcacagttgagccaatcattgcacctacaaattaaacattcaatatccttataaaattctcagcaacataattta 9363956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 9243178 - 9243277
Alignment:
Q  157 gaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcg 256  Q
    |||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||  ||||||| ||||||||| |||||||| ||  ||||||||||||    
T  9243178 gaggataaaataatcttctttgatttattgctgcattttaagcatcctttgtcaaagtttgttttcgaccatgacaatgagatcgagttttgtcgtatcg 9243277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 9243012 - 9243063
Alignment:
Q  4 aagcacagttaagccaatgattgcacctacaaataaaacattcaatatcctta 56  Q
    |||||||||  |||||||||||||||||||||||  ||||||||| |||||||    
T  9243012 aagcacagtagagccaatgattgcacctacaaat-taacattcaacatcctta 9243063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 1234 - 986
Alignment:
Q  10 agttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataatttacaaaaattcttttaaatctgaaccaaacc 109  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| ||| | ||||||| |   ||||||| | | |  | || |||||||||||||||  |    
T  1234 agttgagccaatgattacacctacaaattaaacattcaatatcattaaataattctcagatgcataattaaaagatttcctcttaaatctgaaccaacac 1135  T
Q  110 caaaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttc---tttgatttgttcttgcatttaaagcatccttt 206  Q
    ||||| ||||| ||||||| || |||| ||||   |||||||||| |||||||||||||||||||   |||||||||| ||| ||||  |||||||||||    
T  1134 caaaatcaaacgaaatgaggtataaaaatgaaggaatctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaagcatccttt 1035  T
Q  207 gtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatc 255  Q
    ||||||  ||||| |||||||||||||| |||||||  ||||| |||||    
T  1034 gtcaattgttgttcccgaccatgataataagattgagttttgttgtatc 986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 971 - 926
Alignment:
Q  282 atccggaagaataaggggtgaaactcgttgagacaatttggtgcag 327  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||    
T  971 atccgaaagaataaggggagaaactcgttgagacaatttggtgcag 926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 15910871 - 15911119
Alignment:
Q  10 agttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataatttacaaaaattcttttaaatctgaaccaaacc 109  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| ||| | ||||||| |   ||||||| | | |  | || |||||||||||||||  |    
T  15910871 agttgagccaatgattacacctacaaattaaacattcaatatcattaaataattctcagatgcataattaaaagatttcctcttaaatctgaaccaacac 15910970  T
Q  110 caaaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttc---tttgatttgttcttgcatttaaagcatccttt 206  Q
    ||||| ||||| ||||||| || |||| ||||   |||||||||| |||||||||||||||||||   |||||||||| ||| ||||  |||||||||||    
T  15910971 caaaatcaaacaaaatgaggtataaaaatgaaggaatctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaagcatccttt 15911070  T
Q  207 gtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatc 255  Q
    ||||||  ||||| |||||||||||||| |||||||  ||||| |||||    
T  15911071 gtcaattgttgttcccgaccatgataataagattgagttttgttgtatc 15911119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 15911134 - 15911179
Alignment:
Q  282 atccggaagaataaggggtgaaactcgttgagacaatttggtgcag 327  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||    
T  15911134 atccgaaagaataaggggagaaactcgttgagacaatttggtgcag 15911179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University