View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_1 (Length: 461)
Name: NF10104_high_1
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 115 - 359
Target Start/End: Complemental strand, 19407383 - 19407137
Alignment:
| Q |
115 |
tttaatcatatggtcattatttaatcatattatctttcaccataagacactcctctcatttaaaacat--cacacacacaatgtatataaaatattgagg |
212 |
Q |
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| T |
19407383 |
tttaatcatatggtcattatttaatcatattatctttcaccataagacactcctctcatttgaaacatatcacacacacaatgtatataaaatattgagg |
19407284 |
T |
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| Q |
213 |
tgttacattatgcacttagaaataacatataattatttttcgaaataattgattcaatctttctcacagctacacatatgcaaacgacacttttgaaccc |
312 |
Q |
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| T |
19407283 |
tgttacattatgcacttagaaatgacatataattatttttcgaaataattgattcaatttttctcacagctacacatatgcaaacgacacttctgaaccc |
19407184 |
T |
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| Q |
313 |
atggttggcgacataggttccaagtacaatcttcatcagtagagcag |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19407183 |
atggttggcgacataggttccaagtacaatcttcatcagtagagcag |
19407137 |
T |
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