View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_13 (Length: 270)
Name: NF10104_high_13
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 17435581 - 17435823
Alignment:
| Q |
17 |
acaaaaagtgctgagtactatgcaagtatatgatcaagattggatatatgaaagaatattaatataaaatctgacaccaaattgaaattttgcgtcatat |
116 |
Q |
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| T |
17435581 |
acaaaaagtgttgagtactatgcaagtatatgatcaagattggatatatgaaaggatattaatataaaatctgacaccaaattgagattttgcgtcatat |
17435680 |
T |
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| Q |
117 |
gaattgtaaaactgaagaaattctcagcaatacaagaaacaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagttagg |
216 |
Q |
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| T |
17435681 |
gaattgtaaaactgaagaaattctcagctatataacaaacaagagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagttagg |
17435780 |
T |
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| Q |
217 |
ctttgtttgacataaaataattgagtgtgtcggtattattcat |
259 |
Q |
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| T |
17435781 |
ctttgtttgacataaaataattgagtgtgtcggtattattcat |
17435823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 17456657 - 17456897
Alignment:
| Q |
28 |
tgagtactatgcaagtatatgatcaagattggatatatgaaagaatattaatataaaatctgacaccaaattgaaattttgcgtcatatg---------- |
117 |
Q |
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| T |
17456657 |
tgagtgctatgcaagtatatgataaaaaatggatatatgaaagaaaac-aatataaaatttgacatcaaattaagatttcgcatcatatgaaacgggtat |
17456755 |
T |
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| Q |
118 |
-aattgtaaaactgaagaaattctcagcaatacaagaaacaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagttagg |
216 |
Q |
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| T |
17456756 |
gaattgtaaaactggagaaattctcagcaatacaagaaacaaaagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagttagg |
17456855 |
T |
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| Q |
217 |
ctttgtttgacataaaataattgagtgtgtcggtattattca |
258 |
Q |
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| T |
17456856 |
ctttgtttgacataaaataattgagtgtgttgatattattca |
17456897 |
T |
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