View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_14 (Length: 269)
Name: NF10104_high_14
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 3332105 - 3331861
Alignment:
| Q |
18 |
atcaccatagcttaatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatcc |
117 |
Q |
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| T |
3332105 |
atcaccatagcttaatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaacttgtcatattatcc |
3332006 |
T |
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| Q |
118 |
aaagttttacttgatggacaaagagaaatactacatacctatttatactaatctaggactactatttaatggtccatcatagggtaaaaatttattaaaa |
217 |
Q |
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| T |
3332005 |
aaagttttacttgatggacaaagagaaatactacatacctatttatactaatctaggactactatttaatggtccatcatagggtaaaaattaatgaaaa |
3331906 |
T |
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| Q |
218 |
agcagataggattagagagtcctacctggcaacatcttcatctct |
262 |
Q |
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| T |
3331905 |
agcagataggattagagagtcctacctggcaacatctttatctct |
3331861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 3338421 - 3338349
Alignment:
| Q |
31 |
aatttcctatctttagaagaaacaataggattcacatgtaaaaacaacactatcaaagccaatgtgtagaaac |
103 |
Q |
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|||||| ||||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
3338421 |
aatttcttatctctagaagaaacaatagtattcatacataaaaacaatactatcaaagccaatgtgtagaaac |
3338349 |
T |
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