View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104_high_17 (Length: 239)

Name: NF10104_high_17
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104_high_17
NF10104_high_17
[»] chr3 (11 HSPs)
chr3 (78-181)||(4737751-4737854)
chr3 (75-181)||(32077446-32077552)
chr3 (17-78)||(28243299-28243360)
chr3 (78-177)||(46835511-46835610)
chr3 (76-155)||(51646880-51646959)
chr3 (85-181)||(45640660-45640756)
chr3 (81-148)||(5578150-5578217)
chr3 (99-155)||(8507220-8507277)
chr3 (17-78)||(48435606-48435667)
chr3 (31-78)||(48432092-48432139)
chr3 (78-146)||(38511248-38511316)
[»] chr2 (5 HSPs)
chr2 (77-180)||(24538233-24538336)
chr2 (77-135)||(28296911-28296969)
chr2 (20-78)||(44957217-44957275)
chr2 (85-154)||(32277045-32277114)
chr2 (88-133)||(22142304-22142349)
[»] scaffold0596 (1 HSPs)
scaffold0596 (135-239)||(547-652)
[»] chr8 (6 HSPs)
chr8 (76-181)||(14836394-14836498)
chr8 (78-167)||(30850179-30850268)
chr8 (20-78)||(30779124-30779183)
chr8 (31-76)||(2470233-2470278)
chr8 (31-76)||(4544084-4544129)
chr8 (31-76)||(19954531-19954576)
[»] chr7 (6 HSPs)
chr7 (78-181)||(27965191-27965296)
chr7 (88-198)||(45824591-45824704)
chr7 (82-154)||(26000022-26000095)
chr7 (31-78)||(25832154-25832201)
chr7 (78-108)||(45823545-45823575)
chr7 (31-76)||(6898192-6898237)
[»] chr4 (5 HSPs)
chr4 (88-157)||(47965530-47965599)
chr4 (17-78)||(15020243-15020305)
chr4 (99-181)||(52525904-52525986)
chr4 (78-124)||(14866628-14866674)
chr4 (78-122)||(30179071-30179115)
[»] chr1 (9 HSPs)
chr1 (78-155)||(20602215-20602292)
chr1 (76-135)||(29308691-29308750)
chr1 (82-154)||(44621401-44621474)
chr1 (17-78)||(25661599-25661661)
chr1 (31-78)||(36724965-36725012)
chr1 (32-78)||(2493612-2493658)
chr1 (31-76)||(27761631-27761676)
chr1 (48-76)||(28857871-28857899)
chr1 (15-78)||(32987498-32987562)
[»] chr6 (4 HSPs)
chr6 (77-135)||(29279772-29279830)
chr6 (81-152)||(9852103-9852174)
chr6 (31-78)||(14775840-14775887)
chr6 (31-78)||(35129885-35129932)
[»] chr5 (3 HSPs)
chr5 (82-154)||(34509381-34509454)
chr5 (32-78)||(1286058-1286104)
chr5 (31-76)||(18265296-18265341)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 4737854 - 4737751
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcatct 177  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||  ||||| ||||||||||||    
T  4737854 atcatacttatttctaatatgaataacattgctaacaaattgtgccaaccctaattctaatggttttggctccaaactgttatggccattggatgcatct 4737755  T
Q  178 gtgt 181  Q
    ||||    
T  4737754 gtgt 4737751  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 32077552 - 32077446
Alignment:
Q  75 gaaatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgca 174  Q
    ||||||||||||||||||||||  |||||||||| ||||||  | |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  32077552 gaaatcatacttatttctaatatgaataacattgctaacaatttatgccaaccctaatcttgatggttttggctccaaactgttctggccgttagatgca 32077453  T
Q  175 tctgtgt 181  Q
    | |||||    
T  32077452 tttgtgt 32077446  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 28243299 - 28243360
Alignment:
Q  17 aagaatatagtctcttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  28243299 aagaatatagtctcttttatgtgttatgcctttggagaagttaaaggttagagtggtggaaa 28243360  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 46835610 - 46835511
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcatct 177  Q
    |||||||||||||||||||  ||||||| | |||||||| |||| ||||||||||| |||||||||||||| ||||||||  |||| ||| |||||||||    
T  46835610 atcatacttatttctaatatgaataacaatattaacaaattgtgtcaaccctaatcttgatggttttggcttcaaactgttgtggctgttagatgcatct 46835511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 51646880 - 51646959
Alignment:
Q  76 aaatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaact 155  Q
    |||||||||||||||||||||  |||||||||||||||||  |||| ||||||||||| ||||| |||||||||||||||    
T  51646880 aaatcatacttatttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggctccaaact 51646959  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 45640756 - 45640660
Alignment:
Q  85 ttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcatctgtgt 181  Q
    |||| ||||||| |||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||  || ||| ||||| |||| ||||||||    
T  45640756 ttatctctaatatcaataacaatgttaacaaattgtgtcaaccctaatcctaatggttttggctccaaatagttctgaccgttagatgaatctgtgt 45640660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 5578217 - 5578150
Alignment:
Q  81 atacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggct 148  Q
    ||||||||||||||||  |||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  5578217 atacttatttctaatatgaataacattgttaacaatttgtgccaaccctaattctgatggttttggct 5578150  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 8507277 - 8507220
Alignment:
Q  99 aataacattgttaacaaaatgtgccaaccct-aatcctgatggttttggctccaaact 155  Q
    ||||| |||||||||||  |||||||||||| |||| |||||||||||||||||||||    
T  8507277 aataatattgttaacaatttgtgccaacccttaatcttgatggttttggctccaaact 8507220  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 48435606 - 48435667
Alignment:
Q  17 aagaatatagtctcttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    ||||||||| ||| ||||||||  |||| | ||||| |||||||||||||||||||||||||    
T  48435606 aagaatataatcttttttatgttatatgcccttggataagttagaggttagagtggtggaaa 48435667  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 48432092 - 48432139
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    ||||||||  |||| | |||||||||||||||||||||||||||||||    
T  48432092 ttttatgttatatgcccttggagaagttagaggttagagtggtggaaa 48432139  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 38511316 - 38511248
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttgg 146  Q
    ||||||||||||| |||||  ||||||| | |||||||||| ||| ||| |||||||| ||| ||||||    
T  38511316 atcatacttatttttaatatgaataacacttttaacaaaatttgcaaactctaatcctaatgattttgg 38511248  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 24538233 - 24538336
Alignment:
Q  77 aatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcatc 176  Q
    ||||||||||||||||||||  ||||||| |||||||||| |||| ||||||||||||| || ||||||||||||||||||  |||||||||||||||||    
T  24538233 aatcatacttatttctaatatgaataacaatgttaacaaattgtgtcaaccctaatcctaatagttttggctccaaactgttatggccgttggatgcatc 24538332  T
Q  177 tgtg 180  Q
    ||||    
T  24538333 tgtg 24538336  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 28296969 - 28296911
Alignment:
Q  77 aatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcct 135  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||    
T  28296969 aatcatacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaatcct 28296911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 44957217 - 44957275
Alignment:
Q  20 aatatagtctcttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    ||||||||| ||||||||| ||||| | |||||||| ||||||||||||||||||||||    
T  44957217 aatatagtcccttttatgttttatgcccttggagaaattagaggttagagtggtggaaa 44957275  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 32277045 - 32277114
Alignment:
Q  85 ttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaac 154  Q
    ||||||||||||  ||||||| |||||| |||||||| ||||||||||||| ||  ||||||| ||||||    
T  32277045 ttatttctaatactaataacaatgttaaaaaaatgtgtcaaccctaatcctaattattttggcgccaaac 32277114  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 22142349 - 22142304
Alignment:
Q  88 tttctaatagcaataacattgttaacaaaatgtgccaaccctaatc 133  Q
    |||||||||  |||| ||||||||||||| ||||||||||||||||    
T  22142349 tttctaatatgaatagcattgttaacaaattgtgccaaccctaatc 22142304  T

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Target: scaffold0596 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 652 - 547
Alignment:
Q  135 tgatggttttggctccaaa-ctgtactggccgttggatgcatctgtgtatatcttcatgtaatccttctatttccaataaattggaacaaccctgattct 233  Q
    |||||||||||| |||||| |||| ||||||||||||||||||| || |||||| || |||||||| || || ||||||||||||||||| || ||||||    
T  652 tgatggttttgggtccaaaactgtgctggccgttggatgcatctttgcatatctccacgtaatcctactgttcccaataaattggaacaatcccgattct 553  T
Q  234 acctat 239  Q
    ||||||    
T  552 acctat 547  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 14836394 - 14836498
Alignment:
Q  76 aaatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcat 175  Q
    |||||||||||||||||||||  |||||||||||||||||  ||||||||||||||| || |||||||||||||| ||||||  | |||||| ||| |||    
T  14836394 aaatcatacttatttctaatatgaataacattgttaacaatttgtgccaaccctaattcttatggttttggctcc-aactgttatagccgttagattcat 14836492  T
Q  176 ctgtgt 181  Q
    ||||||    
T  14836493 ctgtgt 14836498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 30850268 - 30850179
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgtt 167  Q
    |||||||||||||||||||  ||||||| || ||| ||| |||||||||||||||| | ||| |||||||||||||  || |||||||||    
T  30850268 atcatacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaatcttaatgattttggctccaaatcgttctggccgtt 30850179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 30779183 - 30779124
Alignment:
Q  20 aatatagtctctttta-tgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||||||||| | ||| ||||| | |||||||||||||||||||||||||||||||    
T  30779183 aatatagtctctttcaatgttttatgcccttggagaagttagaggttagagtggtggaaa 30779124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 2470278 - 2470233
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtgga 76  Q
    |||||||| ||||| | |||||| ||||||||||||||||||||||    
T  2470278 ttttatgttttatgcccttggaggagttagaggttagagtggtgga 2470233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 4544084 - 4544129
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtgga 76  Q
    |||||| | ||||| | |||||||||||||||||||||||||||||    
T  4544084 ttttatattttatgcccttggagaagttagaggttagagtggtgga 4544129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 19954576 - 19954531
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtgga 76  Q
    |||||||| ||||| | |||||| ||||||||||||||||||||||    
T  19954576 ttttatgttttatgcccttggaggagttagaggttagagtggtgga 19954531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 27965296 - 27965191
Alignment:
Q  78 atcatacttatttctaatagc--aataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcat 175  Q
    |||||||||||||||||||    |||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||  | |||||| ||| |||    
T  27965296 atcatacttatttctaatatataaataacattgttaacaatttgtgccaaccctaattcttatggttttggctccaaactgttatagccgttagattcat 27965197  T
Q  176 ctgtgt 181  Q
    ||||||    
T  27965196 ctgtgt 27965191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 45824591 - 45824704
Alignment:
Q  88 tttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggc---cgttggatgcatctgtgtata 184  Q
    ||||||||||||||| ||||| ||||||  ||||||||||||||| ||||| |||||||||||||| | |  ||||    |||||||||||||||||| |    
T  45824591 tttctaatagcaatagcattgctaacaatttgtgccaaccctaattctgatagttttggctccaaattattttggcggttgttggatgcatctgtgtaga 45824690  T
Q  185 tcttcatgtaatcc 198  Q
    ||| ||| ||||||    
T  45824691 tctccatttaatcc 45824704  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 26000022 - 26000095
Alignment:
Q  82 tacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcct-gatggttttggctccaaac 154  Q
    |||||||||||||||  ||||||| |||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  26000022 tacttatttctaatactaataacaatgttaagaaaatgtgacaaccctaatcctaaatggttttggctccaaac 26000095  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 25832154 - 25832201
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||| ||||| |||| ||||||||| ||||||||||||||||||    
T  25832154 ttttatgttttatgccttttgagaagttataggttagagtggtggaaa 25832201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 108
Target Start/End: Original strand, 45823545 - 45823575
Alignment:
Q  78 atcatacttatttctaatagcaataacattg 108  Q
    |||||||||||||||||||||||||||||||    
T  45823545 atcatacttatttctaatagcaataacattg 45823575  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 6898192 - 6898237
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtgga 76  Q
    |||||||| ||||| | |||||| ||||||||||||||||||||||    
T  6898192 ttttatgttttatgcccttggaggagttagaggttagagtggtgga 6898237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 47965599 - 47965530
Alignment:
Q  88 tttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgt 157  Q
    |||||||||  |||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  47965599 tttctaatatgaataacattgctaacaatttgtgccaaccctaatcctgatggttttggctccaaactgt 47965530  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 15020243 - 15020305
Alignment:
Q  17 aagaatatagtctctttt-atgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  15020243 aagaatatagtccctttttatgttttatgcctttggagaagttagaggttagagtggtggaaa 15020305  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 52525986 - 52525904
Alignment:
Q  99 aataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaactgtactggccgttggatgcatctgtgt 181  Q
    |||||||||| ||||||  |||| |||||||||| || ||||||||||||||||| ||| ||| ||||| |||||||||||||    
T  52525986 aataacattgctaacaatttgtgtcaaccctaattctaatggttttggctccaaattgttctgaccgttagatgcatctgtgt 52525904  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 14866674 - 14866628
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgcca 124  Q
    |||||||||||||||||||  ||||||| |||||||||| |||||||    
T  14866674 atcatacttatttctaatatgaataacaatgttaacaaattgtgcca 14866628  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 30179115 - 30179071
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgc 122  Q
    |||||||||||||||||||  |||||||||| ||||||| |||||    
T  30179115 atcatacttatttctaatatgaataacattgctaacaaattgtgc 30179071  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 20602215 - 20602292
Alignment:
Q  78 atcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaaact 155  Q
    |||||| ||| ||||||||  |||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||    
T  20602215 atcatatttaattctaatatgaataacattgttaacaatttgtgccaaccctcatcttgatggttttggctccaaact 20602292  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 29308691 - 29308750
Alignment:
Q  76 aaatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcct 135  Q
    |||||||||||||||||||||  |||||||||||||||||| |||| ||||| |||||||    
T  29308691 aaatcatacttatttctaatatgaataacattgttaacaaattgtgtcaaccttaatcct 29308750  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 44621474 - 44621401
Alignment:
Q  82 tacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcct-gatggttttggctccaaac 154  Q
    |||||||||||||||  ||||||| |||||| |||||||| |||||||||||||  ||||||||||||| ||||    
T  44621474 tacttatttctaatactaataacaatgttaagaaaatgtgtcaaccctaatcctaaatggttttggctcaaaac 44621401  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 25661599 - 25661661
Alignment:
Q  17 aagaatatagtctctttt-atgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||||||| ||||| |||| ||||| | |||||||||||||||||| ||||||||||||    
T  25661599 aagaatatagtccctttttatgttttatgcccttggagaagttagaggttggagtggtggaaa 25661661  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 36725012 - 36724965
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||| ||||| | | |||||||||||||||||||||||||||||    
T  36725012 ttttatgttttatgccctgggagaagttagaggttagagtggtggaaa 36724965  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 2493612 - 2493658
Alignment:
Q  32 tttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    ||||||| ||||| | |||||||||||||||||||||| ||||||||    
T  2493612 tttatgttttatgcccttggagaagttagaggttagagcggtggaaa 2493658  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 27761631 - 27761676
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtgga 76  Q
    |||||| | ||||| | |||||||||||||||||||||||||||||    
T  27761631 ttttatattttatgcccttggagaagttagaggttagagtggtgga 27761676  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 28857871 - 28857899
Alignment:
Q  48 ttggagaagttagaggttagagtggtgga 76  Q
    |||||||||||||||||||||||||||||    
T  28857871 ttggagaagttagaggttagagtggtgga 28857899  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 32987562 - 32987498
Alignment:
Q  15 tcaagaatatagtctctttt-atgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||||||||||| ||||| |||| ||| | | ||| | |||||||||||||||||||||||||    
T  32987562 tcaagaatatagtccctttttatgttttaagcccttgtataagttagaggttagagtggtggaaa 32987498  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 29279772 - 29279830
Alignment:
Q  77 aatcatacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcct 135  Q
    ||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||    
T  29279772 aatcatacttatttctaatatgaatagcattgttaacaaattgtgccaaccctaatcct 29279830  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 9852103 - 9852174
Alignment:
Q  81 atacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcctgatggttttggctccaa 152  Q
    ||||||||||||||||  ||||||| || ||| ||| |||||||||||||||||| ||  ||||||||||||    
T  9852103 atacttatttctaatatgaataacactgctaaaaaattgtgccaaccctaatcctaatctttttggctccaa 9852174  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 14775887 - 14775840
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    |||||| | ||||| | |||||||||||||||||||||||||||||||    
T  14775887 ttttatcttttatgcccttggagaagttagaggttagagtggtggaaa 14775840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 35129932 - 35129885
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    ||||||||  |||| | |||||||||||||||||||||||||||||||    
T  35129932 ttttatgttatatgcccttggagaagttagaggttagagtggtggaaa 35129885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 34509454 - 34509381
Alignment:
Q  82 tacttatttctaatagcaataacattgttaacaaaatgtgccaaccctaatcct-gatggttttggctccaaac 154  Q
    |||||||||||||||  ||||||| |||||| |||||||| |||||||||||||  ||| ||||||||||||||    
T  34509454 tacttatttctaatactaataacaatgttaagaaaatgtgtcaaccctaatcctaaatgattttggctccaaac 34509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 1286058 - 1286104
Alignment:
Q  32 tttatgtgttatgtctttggagaagttagaggttagagtggtggaaa 78  Q
    ||||||| ||||| ||||||||||||| || ||||||||||||||||    
T  1286058 tttatgttttatgcctttggagaagttggatgttagagtggtggaaa 1286104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 18265296 - 18265341
Alignment:
Q  31 ttttatgtgttatgtctttggagaagttagaggttagagtggtgga 76  Q
    |||||||| ||||| | ||||||| |||||||||||||||||||||    
T  18265296 ttttatgttttatgcccttggagatgttagaggttagagtggtgga 18265341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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