View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104_high_19 (Length: 237)

Name: NF10104_high_19
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104_high_19
NF10104_high_19
[»] chr3 (10 HSPs)
chr3 (14-144)||(30154743-30154873)
chr3 (48-138)||(30086834-30086923)
chr3 (48-138)||(30056650-30056738)
chr3 (64-138)||(30074726-30074798)
chr3 (48-123)||(30073063-30073137)
chr3 (48-138)||(30069455-30069544)
chr3 (14-43)||(30086766-30086795)
chr3 (48-138)||(30050193-30050282)
chr3 (48-134)||(30082070-30082155)
chr3 (83-138)||(30458631-30458684)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 30154743 - 30154873
Alignment:
Q  14 acaatatactattgtttgttaattatgagcatagcaatttataaacaaaataatgtttttgtctgatccatggatcctgaaatattgccttattaaattc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30154743 acaatatactattgtttgttaattatgagcatagcaatttatagataaaataatgtttttgtctgatccatgtatcctgaaatattgccttattaaattc 30154842  T
Q  114 agaagcgaggagcacgaggttaattgcttat 144  Q
    ||||| ||||| |||||||||||||||||||    
T  30154843 agaagtgaggaacacgaggttaattgcttat 30154873  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 30086834 - 30086923
Alignment:
Q  48 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 138  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||| ||||  || ||||||||||||||||||||||  |||||||||||||    
T  30086834 caatttatagacaaaattaatgtttttgccttatccatggatcctcaaat--tgtcttattaaattcagaagcgagggacacgaggttaatt 30086923  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 30056650 - 30056738
Alignment:
Q  48 caatttataaacaaaataatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 138  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||  |||| | ||||||||||| ||| ||||  ||||| |||||||    
T  30056650 caatttatagacaaaataatgtttttgccttatccatggatcctgaa--attgtcctattaaattcaaaagtgagggacacgaagttaatt 30056738  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 30074726 - 30074798
Alignment:
Q  64 taatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 138  Q
    ||||||||||| || ||||||||||||| ||||  || ||||||||||||||||||||||  |||||||||||||    
T  30074726 taatgtttttgccttatccatggatcctcaaat--tgtcttattaaattcagaagcgagggacacgaggttaatt 30074798  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 30073063 - 30073137
Alignment:
Q  48 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgagg 123  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||| ||||  || ||||||||||||||||||||||    
T  30073063 caatttatagacaaaattaatgtttttgccttatccatggatcctcaaat--tgtcttattaaattcagaagcgagg 30073137  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 30069455 - 30069544
Alignment:
Q  48 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 138  Q
    ||||||||| ||||||| |||||||||  || ||||||||||||| ||||  || |||||||||||||  |||||||  |||||||||||||    
T  30069455 caatttatagacaaaattaatgtttttcccttatccatggatcctcaaat--tgtcttattaaattcaacagcgagggacacgaggttaatt 30069544  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 30086766 - 30086795
Alignment:
Q  14 acaatatactattgtttgttaattatgagc 43  Q
    ||||||||||||||||||||||||||||||    
T  30086766 acaatatactattgtttgttaattatgagc 30086795  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 30050193 - 30050282
Alignment:
Q  48 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 138  Q
    ||||||||| ||||||| |||||||||| || ||||||||||| | ||||  ||  ||||||||||||  |||||||  |||||||||||||    
T  30050193 caatttatagacaaaattaatgtttttgccttatccatggatcttcaaat--tgttttattaaattcaacagcgagggacacgaggttaatt 30050282  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 30082070 - 30082155
Alignment:
Q  48 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggtt 134  Q
    ||||||||| ||||||| |||||||||| || |||  |||||||| ||||  || ||||||| ||||||||||||||  |||||||||    
T  30082070 caatttatagacaaaattaatgtttttgccttatcagtggatcctcaaat--tgtcttattatattcagaagcgagggacacgaggtt 30082155  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 30458684 - 30458631
Alignment:
Q  83 atggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 138  Q
    ||||||||||||||  || ||||||||||||| ||||||||  |||||||||||||    
T  30458684 atggatcctgaaat--tgtcttattaaattcaaaagcgagggacacgaggttaatt 30458631  T

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