View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_3 (Length: 426)
Name: NF10104_high_3
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 23046494 - 23046095
Alignment:
| Q |
11 |
cacagactatttgaataatttgaaatacattaaaccaaattttatcattattaatgaaattaactaaattcttcaatagaagtgatttacttgaaaagca |
110 |
Q |
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| T |
23046494 |
cacagactatttgaataatttgaaatacattaaaccaaattttatcattattaatgaaattaactaaattcttcaatagaagtgatttacttgaaaagca |
23046395 |
T |
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| Q |
111 |
catacgagaggaagggcatatttattgcatgatagcataagttaacagatttttaggtcctaggtgggagttgggaacatgacagaagctagattataca |
210 |
Q |
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| T |
23046394 |
catacgagaggaagggcatatttattgcatgatagcataagttaacagatttttaggtcctaggtgggagttgggaacatgacagaagctagattataca |
23046295 |
T |
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| Q |
211 |
ttcacagttgtcgaacataaataaatacttaagcctttattatgaaaccgttgttagttacctatccacaacccaattaacaagcaataactttcattgg |
310 |
Q |
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| T |
23046294 |
ttcacagttgtcgaacataaataaatacttaagcctttattatgaaaccgttgttagttacctatccacaacccaattaacaagcaataactttcattgg |
23046195 |
T |
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| Q |
311 |
aaaaaataaggcagaaccatatataacaacaatttaatatacatgctcagccattttgaagaaaaaataaaataatattgataacacctaacagtaccat |
410 |
Q |
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| T |
23046194 |
aaaaaataaggcagaaccatatataacaacaatttattatacatgctcagccattttgaagaaaaaataaaataatattgataacacctaacagtaccat |
23046095 |
T |
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