View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_4 (Length: 399)
Name: NF10104_high_4
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 35909566 - 35909856
Alignment:
| Q |
14 |
cacatttttctttaaatttgatatcagttttacaactatacaatcactcttattgcaatcttgaattttcttattcacaatgtatcatacaagattccaa |
113 |
Q |
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| T |
35909566 |
cacatttttctttaaatttgatatcagttttacaactatacaatcactcttattgcaatcttgaattttcttattcacaatgtatcatacaagattccaa |
35909665 |
T |
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| Q |
114 |
atccaagatgattattggtttggctgagcaaatggttggattgtacaagattctagtggatgccacacaatctcaagttcagtgtttacactgataacac |
213 |
Q |
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| T |
35909666 |
atccaagatgattattggtttggctgagcaaatgtttggaatgtacaagattctagtggatgc--cacaatctcaagttcagtgtttacactgataacac |
35909763 |
T |
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| Q |
214 |
tttactatttctaagtcagtcatatgggagaatgttgttaatgaacaagcttgtttgtgatacttgtcaaccattagcaaagctagttctaaa |
306 |
Q |
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| T |
35909764 |
tttactatttctaagtcagtcatatgggagaatgttgttaatgaacaagcttgtttgtgatacttgtcaaacattagcaaagctagttctaaa |
35909856 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 28670131 - 28670206
Alignment:
| Q |
86 |
attcacaatgtatcatacaagattccaaatccaagatgattattggtttggctgagcaaatggttggattgtacaa |
161 |
Q |
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| T |
28670131 |
attcacaatgtgtaatataggattccaaatccaggaggatgattggttttgctgagcaagtgaatggattgtacaa |
28670206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 32494561 - 32494501
Alignment:
| Q |
313 |
gagcaagtctacaacaaggagactggaggtggattcgcaacatttctcgagaaatcaacca |
373 |
Q |
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| T |
32494561 |
gagcaagtctacaacaaggagattaaaggtggattcacagcagttgttgagaaatcaacca |
32494501 |
T |
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