View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_5 (Length: 386)
Name: NF10104_high_5
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 69 - 379
Target Start/End: Original strand, 33067088 - 33067398
Alignment:
| Q |
69 |
ctatggatctgtctaatctaattccattatcaaacagttgtaggttcaatacaaagctttggagtttgaacttgaatctgttgaacctgtaaacttctca |
168 |
Q |
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| T |
33067088 |
ctatggatctgtctaatctaattccattatcaaacagttgtaggttcaatacaaagctttggagtttgaacttgaatctgttgaacctgtaaacttctca |
33067187 |
T |
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| Q |
169 |
atggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattcaccctcttgatcacaggtaaaggagg |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067188 |
atggagccaaacttgaacctgatcttcttttccaaagactattctcacttttgtttccttcttccaacttattcaccctcttgatcacaggtaaaggagg |
33067287 |
T |
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| Q |
269 |
atccatttcatcaatttttataccaacaacaacattctcattcctactacacctttcaatatttttgggcaccttcacaatattagtactattacctacc |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067288 |
atccatttcatcaatttttataccaacaacaacattctcattcctaatacacctttcaatatttttgggcaccttcacaatattagtactattacctacc |
33067387 |
T |
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| Q |
369 |
accctttgctt |
379 |
Q |
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||||||||||| |
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| T |
33067388 |
accctttgctt |
33067398 |
T |
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