View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_8 (Length: 338)
Name: NF10104_high_8
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 4407359 - 4407173
Alignment:
| Q |
9 |
agcagagaaatatgtcatcgttgaatccaattaaatctaattacaatacaaaggggaaacaacttaacccccaacaagctaattacaaaatttgaaacca |
108 |
Q |
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| T |
4407359 |
agcagagaaatatgtcatcgttgaatccaattaaatctaattacaatagaaaggggaaacaacttaacccccaacaagctaattacaaaatttgaaacca |
4407260 |
T |
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| Q |
109 |
ccaatacttaaaactctaaagaacttcaccaagacttaactaactaaaccatataattttctcaacaaaaacaataccacatactaa |
195 |
Q |
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| T |
4407259 |
ccaatacttaaaactctaaagaacttcaccaagacttaactaactaaaccatataattttctcaacaaaaacaataccacatactaa |
4407173 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 4407180 - 4407113
Alignment:
| Q |
252 |
catacaaacagtgaggccattaaatataaaactttttcagatcaatttaacatgtttattttacttta |
319 |
Q |
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| T |
4407180 |
catactaacagtgaggccattaaatataaaactttttcagatcaatttaacatgtttattttacttta |
4407113 |
T |
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