View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_high_9 (Length: 318)
Name: NF10104_high_9
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_high_9 |
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| [»] scaffold0519 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 49419923 - 49420120
Alignment:
| Q |
108 |
ggaaattttatatggtacccctacacttataccttcacccatacaaatatttaaaaatgccaattttatcctttttcacctatacattagatttaacatg |
207 |
Q |
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| T |
49419923 |
ggaaattttacttggtacccctacacttataccttcatccatacaaatatttaaaaatgccaattttatccttttacacccatacattagatttaacatg |
49420022 |
T |
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| Q |
208 |
agttcaccccacataagtttttccagcaaacttcatagaagatttctggtttaagaaatatttgtccgaaaaacatcaatgtgacatttgcaaagttc |
305 |
Q |
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| T |
49420023 |
agttcaccccacataagtttttccaacaaacttcatagaagatttccggtttaagaaatatttgtccgaaaaacatcaatgtgacatttgcaaagttc |
49420120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 31261841 - 31261901
Alignment:
| Q |
123 |
tacccctacacttataccttcacccatacaaatatttaaaaatgccaattttatccttttt |
183 |
Q |
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| T |
31261841 |
tacccctacacttatactttcatccttacaaattatgaaaaattccaattttacccttttt |
31261901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0519 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 34 - 125
Alignment:
| Q |
16 |
aaataggtcacacactgtctagcttgtggttggacatcaagcatagatcacattggcccaatccatttaggcccattaaccaataaattaaa |
107 |
Q |
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| T |
34 |
aaataggtcacacaccgtctaccttgtggttggacatcaagcatagatcacattggcccaatccatataggcccattaaccaataaattaaa |
125 |
T |
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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 11234390 - 11234299
Alignment:
| Q |
16 |
aaataggtcacacactgtctagcttgtggttggacatcaagcatagatcacattggcccaatccatttaggcccattaaccaataaattaaa |
107 |
Q |
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| T |
11234390 |
aaataggtcacacaccgtctaccttgtggttggacatcaagcatagatcacattggcccaatccatataggcccattaaccaataaattaaa |
11234299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 26440553 - 26440474
Alignment:
| Q |
108 |
ggaaattttatatggtacccctacacttataccttcacccatacaaatatttaaaaatgccaattttatcctttttcacc |
187 |
Q |
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| T |
26440553 |
ggaaattttacattgcacccctacaattatactttcacccttacaaatatttgaaaatgccaattttatccattttcacc |
26440474 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 51779133 - 51779192
Alignment:
| Q |
123 |
tacccctacacttataccttcacccatacaaatatttaaaaatgccaattttatcctttt |
182 |
Q |
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| T |
51779133 |
tacccctacacatatactttcacccttacaaatttttcaaaattccaattttatcctttt |
51779192 |
T |
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