View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104_low_1 (Length: 589)
Name: NF10104_low_1
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Original strand, 33507133 - 33507687
Alignment:
| Q |
20 |
atcaagcattagcatcaaccactcacgagtaaaatgattttactcagtaattggcattggacataatatcatcaaaaccattatcactagatgattaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33507133 |
atcaagcattagcatcaaccactcacgagtaaaatgattttattcagtaattggcattggacataatatcatcaaaaccattatcactaggtgattaaaa |
33507232 |
T |
|
| Q |
120 |
attgttcccaccttcggtgttgtgttgggatgttgtttcatcttctgcaaatttgacagcaaacagccaaaaacaatataccagcattagaaatgacatc |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33507233 |
attgttcccaccttcggtgt---gttgggattttgtttcatcttctgcaaatttgacagcaaacagccaaaaacaatataccagcattagaaatgacatc |
33507329 |
T |
|
| Q |
220 |
ctcaaa-caaaaacatatactaaattcatgcataccatcaagtgaaattaaactaaaa-aatatcaccataaacattgattagttcattagtgtatggaa |
317 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33507330 |
ctcaaaacaaaaacatatactaaatgcatgcataccatcaagtgaattaaaactaaaaaaatatcaccataaacattgattagttcattagtgtatggaa |
33507429 |
T |
|
| Q |
318 |
aatccaagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33507430 |
aatccaagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattca |
33507529 |
T |
|
| Q |
418 |
attccaaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttaatgtccaagatcagaatatacctatgttgggttgtgaagcattg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
33507530 |
attccaaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttagtgtccaaggtcagaatatacctatgttgggttgtgaaacattg |
33507629 |
T |
|
| Q |
518 |
acagagacatttaacacaacactcacactgagtgctgtgtagatgtttgtgtcaatgt |
575 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
33507630 |
acaccgacatttaacacaacactcacaccgagtgttgtgtaggtgtttgtgtcaatgt |
33507687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University