View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104_low_1 (Length: 589)

Name: NF10104_low_1
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104_low_1
NF10104_low_1
[»] chr5 (1 HSPs)
chr5 (20-575)||(33507133-33507687)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Original strand, 33507133 - 33507687
Alignment:
20 atcaagcattagcatcaaccactcacgagtaaaatgattttactcagtaattggcattggacataatatcatcaaaaccattatcactagatgattaaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
33507133 atcaagcattagcatcaaccactcacgagtaaaatgattttattcagtaattggcattggacataatatcatcaaaaccattatcactaggtgattaaaa 33507232  T
120 attgttcccaccttcggtgttgtgttgggatgttgtttcatcttctgcaaatttgacagcaaacagccaaaaacaatataccagcattagaaatgacatc 219  Q
    ||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33507233 attgttcccaccttcggtgt---gttgggattttgtttcatcttctgcaaatttgacagcaaacagccaaaaacaatataccagcattagaaatgacatc 33507329  T
220 ctcaaa-caaaaacatatactaaattcatgcataccatcaagtgaaattaaactaaaa-aatatcaccataaacattgattagttcattagtgtatggaa 317  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
33507330 ctcaaaacaaaaacatatactaaatgcatgcataccatcaagtgaattaaaactaaaaaaatatcaccataaacattgattagttcattagtgtatggaa 33507429  T
318 aatccaagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33507430 aatccaagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattca 33507529  T
418 attccaaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttaatgtccaagatcagaatatacctatgttgggttgtgaagcattg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||    
33507530 attccaaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttagtgtccaaggtcagaatatacctatgttgggttgtgaaacattg 33507629  T
518 acagagacatttaacacaacactcacactgagtgctgtgtagatgtttgtgtcaatgt 575  Q
    |||  ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
33507630 acaccgacatttaacacaacactcacaccgagtgttgtgtaggtgtttgtgtcaatgt 33507687  T

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