View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_1 (Length: 589)
Name: NF10104_low_1
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10104_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Original strand, 33507133 - 33507687
Alignment:
Q |
20 |
atcaagcattagcatcaaccactcacgagtaaaatgattttactcagtaattggcattggacataatatcatcaaaaccattatcactagatgattaaaa |
119 |
Q |
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T |
33507133 |
atcaagcattagcatcaaccactcacgagtaaaatgattttattcagtaattggcattggacataatatcatcaaaaccattatcactaggtgattaaaa |
33507232 |
T |
 |
Q |
120 |
attgttcccaccttcggtgttgtgttgggatgttgtttcatcttctgcaaatttgacagcaaacagccaaaaacaatataccagcattagaaatgacatc |
219 |
Q |
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T |
33507233 |
attgttcccaccttcggtgt---gttgggattttgtttcatcttctgcaaatttgacagcaaacagccaaaaacaatataccagcattagaaatgacatc |
33507329 |
T |
 |
Q |
220 |
ctcaaa-caaaaacatatactaaattcatgcataccatcaagtgaaattaaactaaaa-aatatcaccataaacattgattagttcattagtgtatggaa |
317 |
Q |
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T |
33507330 |
ctcaaaacaaaaacatatactaaatgcatgcataccatcaagtgaattaaaactaaaaaaatatcaccataaacattgattagttcattagtgtatggaa |
33507429 |
T |
 |
Q |
318 |
aatccaagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattca |
417 |
Q |
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T |
33507430 |
aatccaagacaacgccctccaattaattttggctttcaattcaacttagaaagtgatactcgctcgactcactcaaataaaaactaaaccttcaaattca |
33507529 |
T |
 |
Q |
418 |
attccaaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttaatgtccaagatcagaatatacctatgttgggttgtgaagcattg |
517 |
Q |
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T |
33507530 |
attccaaacactaaagttgcattatatatagcaccttcggattgaaggcctgtttagtgtccaaggtcagaatatacctatgttgggttgtgaaacattg |
33507629 |
T |
 |
Q |
518 |
acagagacatttaacacaacactcacactgagtgctgtgtagatgtttgtgtcaatgt |
575 |
Q |
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T |
33507630 |
acaccgacatttaacacaacactcacaccgagtgttgtgtaggtgtttgtgtcaatgt |
33507687 |
T |
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