View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104_low_12 (Length: 391)

Name: NF10104_low_12
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104_low_12
NF10104_low_12
[»] chr2 (5 HSPs)
chr2 (173-380)||(28629894-28630101)
chr2 (20-161)||(21203372-21203508)
chr2 (253-328)||(28615620-28615695)
chr2 (110-162)||(21949748-21949800)
chr2 (68-112)||(45212918-45212962)
[»] chr4 (5 HSPs)
chr4 (20-162)||(41309989-41310131)
chr4 (20-145)||(34160855-34160980)
chr4 (67-162)||(2049168-2049265)
chr4 (67-162)||(12763217-12763314)
chr4 (101-158)||(10457425-10457482)
[»] chr1 (10 HSPs)
chr1 (20-162)||(13129226-13129368)
chr1 (20-162)||(52316161-52316303)
chr1 (20-162)||(34106295-34106437)
chr1 (20-161)||(43699463-43699604)
chr1 (20-156)||(3525990-3526125)
chr1 (29-162)||(27491930-27492063)
chr1 (41-161)||(41114626-41114744)
chr1 (47-162)||(45602845-45602957)
chr1 (20-90)||(11084678-11084748)
chr1 (118-162)||(11084773-11084817)
[»] chr8 (5 HSPs)
chr8 (27-162)||(40318404-40318539)
chr8 (20-162)||(15795852-15795995)
chr8 (36-161)||(2611739-2611864)
chr8 (68-162)||(40716101-40716197)
chr8 (107-162)||(10150704-10150759)
[»] chr6 (17 HSPs)
chr6 (22-157)||(8859276-8859411)
chr6 (51-161)||(5764362-5764475)
chr6 (51-161)||(5767897-5768010)
chr6 (51-161)||(5771432-5771545)
chr6 (51-161)||(5774967-5775080)
chr6 (51-161)||(5778502-5778615)
chr6 (51-161)||(5782037-5782150)
chr6 (51-161)||(5785572-5785685)
chr6 (51-161)||(5789107-5789220)
chr6 (51-161)||(5792642-5792755)
chr6 (51-161)||(5796177-5796290)
chr6 (51-161)||(5799712-5799825)
chr6 (51-161)||(5803247-5803360)
chr6 (51-161)||(5806782-5806895)
chr6 (51-161)||(5810317-5810430)
chr6 (51-161)||(5813852-5813965)
chr6 (51-161)||(5817387-5817500)
[»] chr3 (4 HSPs)
chr3 (20-162)||(34466622-34466761)
chr3 (36-158)||(51499657-51499782)
chr3 (68-154)||(3847675-3847763)
chr3 (71-162)||(11536388-11536481)
[»] chr7 (5 HSPs)
chr7 (29-162)||(34483967-34484100)
chr7 (23-161)||(37370508-37370646)
chr7 (67-132)||(38836323-38836390)
chr7 (69-150)||(39540534-39540617)
chr7 (68-133)||(49094359-49094426)
[»] chr5 (1 HSPs)
chr5 (68-161)||(36863586-36863681)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 173 - 380
Target Start/End: Original strand, 28629894 - 28630101
Alignment:
173 ttggattacaagggtaattccaacctattacaatcaatgaaacatcaaattaaatctttttcatattgaacaaacatatcttctaatgatttttctcctt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28629894 ttggattacaagggtaattccaacctattacaatcaatgaaacatcaaattaaatctttttcatattgaacaaacatatcttctaatgatttttctcctt 28629993  T
273 gacatgcaggaaatttggacattgtgtagaattctaaaaagaaatgtatcacaaaggaaacaaataccagagatgaaacaattagccaacaaacgtcaat 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
28629994 gacatgcaggaaatttggacattgtgtagaattctaaaaagaaatgtatcacaaaggaaacaaataccagagatgaaacaattagccaacaaacttcaat 28630093  T
373 ccgttcat 380  Q
    ||||||||    
28630094 ccgttcat 28630101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 21203372 - 21203508
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    |||||||| |||||| |||| || |||||||||||| ||||||||||    |||||||||||||||||||||| |||| |||| |||||||||||| |||    
21203372 ctttagggacatgtgcagccataagctttcttggcaggctacacttt----tgttgctataggatagcctttgccttcctttc-ctcttttgtaaatagg 21203466  T
120 ttcaggccttaatcgtggtttgcattttattttcattgcttt 161  Q
    |||||||||||||| || ||||||||||||||||||||||||    
21203467 ttcaggccttaatcctgatttgcattttattttcattgcttt 21203508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 28615620 - 28615695
Alignment:
253 ttctaatgatttttctccttgacatgcaggaaatttggacattgtgtagaattctaaaaagaaatgtatcacaaag 328  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
28615620 ttctaatgatttttctatatgacatgcaggaaatttggacattgtgtagaattttcaaaagaaatgtatcaaaaag 28615695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 21949800 - 21949748
Alignment:
110 tgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||||||    
21949800 tgtaaacaggttcaggccttaatcctggttttcattttattttgattgctttg 21949748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 45212918 - 45212962
Alignment:
68 ttttgttgctataggatagcctttggcttcatttctctcttttgt 112  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||    
45212918 ttttgttgctataggatatcatttggcttcctttctctcttttgt 45212962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 41309989 - 41310131
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||    
41309989 ctttaggggcatgtgcagccctatgctttcttggcaggctacactttgttttgttgctatagggtagcctttggcgtcctttctctcttttgtaaacagg 41310088  T
120 ttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
41310089 ttcaagccttaatcctggtttgcattttattttcattgctttg 41310131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 34160980 - 34160855
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |    
34160980 ctttaggggcatgtgcaaccctatgctttcttggcaagttacactttgttttgttgctataggatagcttttggcttcctttctctcttttgtaaacatg 34160881  T
120 ttcaggccttaatcgtggtttgcatt 145  Q
     ||||||||||||  || ||||||||    
34160880 ctcaggccttaataatgatttgcatt 34160855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 2049168 - 2049265
Alignment:
67 gttttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||| || ||||| || ||||||||||||||||    
2049168 gttttgttgctataggatagcctttggcttcctttctctcttttgtgcaaataggttcaggccttaatcctgatttgctttatattttcattgctttg 2049265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 12763314 - 12763217
Alignment:
67 gttttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||| || ||||| || ||||||||||||||||    
12763314 gttttgttgctataggatagcttttggcttcctttctctcttttgtgtaaacaggttcaggccttaatcctgatttgctttatattttcattgctttg 12763217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 10457482 - 10457425
Alignment:
101 tctctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgc 158  Q
    |||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||    
10457482 tctctcttgtgtaaacaggttcaggccttaatcctgatttgcattttattctcattgc 10457425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 13129226 - 13129368
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||  ||||||||||||||    
13129226 ctttaggggcatgtgcagccctatgctttcttggcaggctacactttgttttgttgctatagggtagcctttggcttcctttcttacttttgtaaacagg 13129325  T
120 ttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
13129326 ttcaggccttaatcctggtttgcattttattttcattgctttg 13129368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 52316161 - 52316303
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
52316161 ctttaggggcatgtgcagccctatgctttcttggcaagttacactttgttttgttgctataggatagcctttggtttcgtttctctcttttgtaaacagg 52316260  T
120 ttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||| ||||||||| || ||||||| |||||||||||||||||    
52316261 ttcatgccttaatcctgatttgcatgttattttcattgctttg 52316303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 34106437 - 34106295
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||| ||||||||| | |||||||||||||||||| | || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
34106437 ctttaagggcatgtgcaaccctatgctttcttggcaggttatactttattttgttgctatagggtagcctttggcttcctttctctcttttgtaaacagg 34106338  T
120 ttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
34106337 ttcaggccttaatcatggtttgcattttattttcattgctttg 34106295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 43699463 - 43699604
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    |||||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
43699463 ctttagggacatgtgcagccatatgctttcttggcaagctacacttagttttgttgctataggatagcctttggcttccttttcctcttttgtaaacagg 43699562  T
120 ttcaggccttaatcgtggtttgcattttattttcattgcttt 161  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
43699563 ttcaggccttaatcctcgtttgcattctattttcattgcttt 43699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 3525990 - 3526125
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||    
3525990 ctttaggggcatgtgcagctctatgctttcttggcaggttacactttgttttgttgctataggataacctt-ggcttcctttctctcttttgtaaacagg 3526088  T
120 ttcaggccttaatcgtggtttgcattttattttcatt 156  Q
    |||||||||||||| || |||||||||||||||||||    
3526089 ttcaggccttaatcctgatttgcattttattttcatt 3526125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 27491930 - 27492063
Alignment:
29 catgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggcct 128  Q
    |||||| |||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||    
27491930 catgtgcagccctatgctttcttagtaggctacactttgctttgttgctataggatagcctttggcttcctttctctcttttgtaaatagattcaagcct 27492029  T
129 taatcgtggtttgcattttattttcattgctttg 162  Q
    ||||| ||||||| ||||||||||||||||||||    
27492030 taatcatggtttgaattttattttcattgctttg 27492063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 41114626 - 41114744
Alignment:
41 tatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggttt 140  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||| ||| ||||||    
41114626 tatgctttcttggcaggctacacttagttttgttgctataggatagcctttggcttc-cttccctcttttgtaaacaggttcagacctt-atcctggttt 41114723  T
141 gcattttattttcattgcttt 161  Q
    ||||| |||||| ||||||||    
41114724 gcattctattttgattgcttt 41114744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 45602957 - 45602845
Alignment:
47 ttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgtggtttgcattt 146  Q
    ||||||||| | ||||||||||||| ||| ||||||||| ||||||   || ||||||||||||||||||||||| |||| |||||| || |||||||||    
45602957 ttcttggcaagttacactttgttttattgatataggatatcctttg---tcctttctctcttttgtaaacaggttgaggctttaatcctgatttgcattt 45602861  T
147 tattttcattgctttg 162  Q
    ||||||||||||||||    
45602860 tattttcattgctttg 45602845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 11084678 - 11084748
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctt 90  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||    
11084678 ctttaggggcatgtgcagtcctatgctttcttggcaggctacactttgttttgttgctatagggtagcctt 11084748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 11084773 - 11084817
Alignment:
118 ggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
11084773 ggttcaggccttaatcctggtttgcattttattttcattgctttg 11084817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 40318539 - 40318404
Alignment:
27 ggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggc 126  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
40318539 ggcatgtgcaaccctatgctttcttggcaggctacactttgttttgttgctataggatagcctttggcttcctttctctcttttgtaaataggttcaggc 40318440  T
127 cttaatcgtggtttgcattttattttcattgctttg 162  Q
     |||||| ||||||| ||||||||||||||||||||    
40318439 tttaatcctggtttgaattttattttcattgctttg 40318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 15795995 - 15795852
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttt--tgtaaaca 117  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||  ||||||||    
15795995 ctttaggggcatgtgcagccctatgctttct-ggcaggctacactttgttttgttgctataggaaagcctttgacttcatttctctcttttgtgtaaaca 15795897  T
118 ggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
      ||||| |||||||| ||||||||||||||||||||||||||||    
15795896 aattcagaccttaatcatggtttgcattttattttcattgctttg 15795852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 2611864 - 2611739
Alignment:
36 agccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggccttaatcgt 135  Q
    |||| |||| |||||||||| ||||| ||| ||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |    
2611864 agccatatgttttcttggcaggctactcttagttttgttgctttaggatagcctttggcttcctttccctcttttgtaaataggttcaggccttaatcct 2611765  T
136 ggtttgcattttattttcattgcttt 161  Q
    |||||||||| |||||||||||||||    
2611764 ggtttgcattctattttcattgcttt 2611739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 40716101 - 40716197
Alignment:
68 ttttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    ||||||| ||| |||||| |||||  |||| ||||||||||||||  ||| ||||||| ||||||||| ||||||||||||||||||||||||||||    
40716101 ttttgttactacaggataacctttaccttcctttctctcttttgtgtaaataggttcatgccttaatcctggtttgcattttattttcattgctttg 40716197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 10150704 - 10150759
Alignment:
107 ttttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    ||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||    
10150704 ttttgtaaacaggttcaagccttaatcctagtttgcaatttattttcattgctttg 10150759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 8859276 - 8859411
Alignment:
22 ttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggtt 121  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||    
8859276 ttaggggcatgtgcagccctatgctttcttggtaggctacactttgttttgtttctataggatagcctttggcttcctttctctcttttgtaaacagatt 8859375  T
122 caggccttaatcgtggtttgcattttattttcattg 157  Q
    |||||||||||| |  ||||||||||||||||||||    
8859376 caggccttaatcctaatttgcattttattttcattg 8859411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5764475 - 5764362
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5764475 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5764376  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5764375 attttcattgcttt 5764362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5768010 - 5767897
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5768010 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5767911  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5767910 attttcattgcttt 5767897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5771545 - 5771432
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5771545 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5771446  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5771445 attttcattgcttt 5771432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5775080 - 5774967
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5775080 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5774981  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5774980 attttcattgcttt 5774967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5778615 - 5778502
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5778615 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5778516  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5778515 attttcattgcttt 5778502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5782150 - 5782037
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5782150 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5782051  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5782050 attttcattgcttt 5782037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5785685 - 5785572
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5785685 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5785586  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5785585 attttcattgcttt 5785572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5789220 - 5789107
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5789220 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5789121  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5789120 attttcattgcttt 5789107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5792755 - 5792642
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5792755 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5792656  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5792655 attttcattgcttt 5792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5796290 - 5796177
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5796290 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5796191  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5796190 attttcattgcttt 5796177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5799825 - 5799712
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5799825 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5799726  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5799725 attttcattgcttt 5799712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5803360 - 5803247
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5803360 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5803261  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5803260 attttcattgcttt 5803247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5806895 - 5806782
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5806895 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5806796  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5806795 attttcattgcttt 5806782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5810430 - 5810317
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5810430 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5810331  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5810330 attttcattgcttt 5810317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5813965 - 5813852
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5813965 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5813866  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5813865 attttcattgcttt 5813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 5817500 - 5817387
Alignment:
51 tggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctc--ttttgtaaacaggttcaggccttaatcgtggtttgcatttt 147  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||| |  ||||||||||    
5817500 tggcaggctactctttgtttttgttgctataggatagcctttggcttcctttctctctattgtgtaaacaggttcaaaccttaatcctaatttgcatttt 5817401  T
148 attttcattgcttt 161  Q
    ||||||||||||||    
5817400 attttcattgcttt 5817387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 34466761 - 34466622
Alignment:
20 ctttaggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacagg 119  Q
    ||||||||||||||| ||| |||||||||| | ||| ||||||||||   |||||| ||||||||||||||||||||| |||||||||||||||||||||    
34466761 ctttaggggcatgtgcagctctatgctttcatagcaggctacacttt---ttgttgttataggatagcctttggcttcctttctctcttttgtaaacagg 34466665  T
120 ttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||| || |||||| ||||||||||||||||||||||||||||    
34466664 ttcatgctttaatcctggtttgcattttattttcattgctttg 34466622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 51499782 - 51499657
Alignment:
36 agccctatgctttcttggcatgctacactttgtttt-gttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaat 132  Q
    |||||| ||||||  ||||| ||| | ||||||||| |||| || ||||||||||| |||||| ||||| ||||||||  |||||| |||||||||||||    
51499782 agccctttgcttttatggcaggctcctctttgtttttgttgataaaggatagccttaggcttcctttctttcttttgtgtaaacagattcaggccttaat 51499683  T
133 cgtggtttgcattttattttcattgc 158  Q
    | ||||||||||||||||||||||||    
51499682 cctggtttgcattttattttcattgc 51499657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 3847763 - 3847675
Alignment:
68 ttttgttgctataggatagcctttggcttcatttc--tctcttttgtaaacaggttcaggccttaatcgtggtttgcattttattttca 154  Q
    ||||||||||||||||||||||| | |||| ||||  ||| ||||||||||||| ||||||||||||| | ||||||| ||||||||||    
3847763 ttttgttgctataggatagccttagacttcctttccttcttttttgtaaacagggtcaggccttaatcctagtttgcaatttattttca 3847675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 11536388 - 11536481
Alignment:
71 tgttgctataggatagcctttggcttcatttctctct--tttgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgctttg 162  Q
    |||||||| |||| ||||||  ||||| ||||| |||  | |||||||||||||||||||||||| ||||||| | |||||||| |||||||||    
11536388 tgttgctaaaggaaagccttatgcttcctttctttctaatgtgtaaacaggttcaggccttaatcatggtttgtaatttatttttattgctttg 11536481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 34483967 - 34484100
Alignment:
29 catgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttcaggcct 128  Q
    |||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||    
34483967 catgtgcagccttatgcttccttggcatgttacactttgttttgttgctataggatagccttaggcttcctttctctcttttgtaaataggttcagacct 34484066  T
129 taatcgtggtttgcattttattttcattgctttg 162  Q
    ||||  |||||||||||||||||| |||| ||||    
34484067 taattctggtttgcattttatttttattgttttg 34484100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 37370508 - 37370646
Alignment:
23 taggggcatgtggagccctatgctttcttggcatgctacactttgttttgttgctataggatagcctttggcttcatttctctcttttgtaaacaggttc 122  Q
    ||||| ||| || |||| ||| |||| |||||| ||||||||| ||||||||| |||||||||| |||| ||||| |||| |||||||||||| ||| ||    
37370508 tagggacatttgaagccatattctttattggcaggctacacttagttttgttgttataggatagtctttagcttcctttcactcttttgtaaataggctc 37370607  T
123 aggccttaatcgtggtttgcattttattttcattgcttt 161  Q
    |||  |||||  || ||||||||||||||||||||||||    
37370608 aggtattaatactgatttgcattttattttcattgcttt 37370646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 38836323 - 38836390
Alignment:
67 gttttgttgctataggatagcctttggcttcatttctctcttt--tgtaaacaggttcaggccttaat 132  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
38836323 gttttgttgctataggatagcctttggcttcctttctctcttttgtgtaaacaggttcagaccttaat 38836390  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 39540534 - 39540617
Alignment:
69 tttgttgctataggatagcctttggcttcatttctctcttttgt--aaacaggttcaggccttaatcgtggtttgcattttatt 150  Q
    |||||||||||||||||||||| |||||| ||| | ||||||||  ||| ||||||||||||||||| ||||||||| ||||||    
39540534 tttgttgctataggatagccttaggcttcctttatttcttttgtgtaaaaaggttcaggccttaatcctggtttgcaatttatt 39540617  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 49094426 - 49094359
Alignment:
68 ttttgttgctataggatagcctttggcttcatttctctcttttg--taaacaggttcaggccttaatc 133  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||  |||||| ||||| |||||||||    
49094426 ttttgttgctataggataacctttggtttcttttctctcttttgtataaacaagttcaagccttaatc 49094359  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 36863681 - 36863586
Alignment:
68 ttttgttgctataggatagcctttggcttcatttctctcttt--tgtaaacaggttcaggccttaatcgtggtttgcattttattttcattgcttt 161  Q
    ||||||||||||||||||| |||||||||| |||||||||||  || ||||| ||||||||||||||  ||||||||||||||||| |||||||||    
36863681 ttttgttgctataggatagtctttggcttcctttctctcttttatgcaaacatgttcaggccttaattttggtttgcattttatttccattgcttt 36863586  T

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