View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_15 (Length: 367)
Name: NF10104_low_15
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 10308080 - 10307723
Alignment:
| Q |
10 |
cgttggattaagattagatgacttatattccgatttccgacataaccaagtcatattttgaatacaaatttgaaatatgaaccttccaatctcaattcgg |
109 |
Q |
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| T |
10308080 |
cgttggattaagattagatgacttatattccgatttccgacataaccaagtcatattttgaattcaaatttgaaatatgaaccttccaatctcaattcgg |
10307981 |
T |
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| Q |
110 |
aagttgaaatttaccgattgcagtgacggcggagtacttccactgcagctaaaccaaatccttctaagccttgtcttttgaagaacatctaatgccaaat |
209 |
Q |
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| T |
10307980 |
aagttgaaatttaccgattgcagtgacggcggagtacttccactgcagctaaaccaaatccttctaagccttgtcttttgaagaacatctaatgccaaat |
10307881 |
T |
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| Q |
210 |
tcccaaaatgactgagacagtgaaaagcagcagaagtgtcacatttccccctggaatgaaagatggcctgcaaaatcatttgttacagttagaaatcagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10307880 |
tcccaaaatgactgagacagtgaaaagcagcagaagtgtcacatttccccctggaatgaaagatggcctgcaaaatcatttgttacagttagaaatcagt |
10307781 |
T |
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| Q |
310 |
aaccacagccttttcattcatactgctatgaagtactgacacatacatcgaacacaac |
367 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10307780 |
aaccgcagccttttcattcacactgctatgaagtactgacacatacatcgaacacaac |
10307723 |
T |
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