View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_16 (Length: 362)
Name: NF10104_low_16
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 27294426 - 27294297
Alignment:
| Q |
17 |
acaacagtcgtcttcccaaattatattgtatatccattgtttgtgcccaagacggaaaggccctctagataagaaacacaaggtgtttgatcctcctcca |
116 |
Q |
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| T |
27294426 |
acaacagtcgtcttcccaaattatattgtatatccattgtttgtgcccaagagggaaaggccctctagataagaaacacaa-gtgtttgatcctcctcca |
27294328 |
T |
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| Q |
117 |
tcaaaacaagtgtttagaacttagaatatca |
147 |
Q |
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| T |
27294327 |
tcaaaacaagtgtttagaacttagaatatca |
27294297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 27279652 - 27279509
Alignment:
| Q |
17 |
acaacagtcgtcttcccaaattatatt---gtatatccattgtttgtgcccaagacggaaaggccctctagataagaaacacaaggtgtttgatcctcct |
113 |
Q |
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| T |
27279652 |
acaacagtcgtctccccaaattatactactgtatatccattgcttgtgctcaatagggaagaaccctctagctaagaaacacaaggtgattgatcctcct |
27279553 |
T |
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| Q |
114 |
ccatcaaaacaagtgtttagaacttagaatatcattggaaaata |
157 |
Q |
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| T |
27279552 |
ccatcaaaataagtggttaaaccttagaatatcattggcaaata |
27279509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 27279356 - 27279306
Alignment:
| Q |
185 |
atcaattccctcaaacccgtggatttgtcccgaaaattattaaaactaatc |
235 |
Q |
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| T |
27279356 |
atcaattccttcaaatccgtggatttgtccccaaaattattaaaactaatc |
27279306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27263979 - 27263925
Alignment:
| Q |
70 |
ggaaaggccctctagataagaaacacaaggtgtttgatcctcctccatcaaaaca |
124 |
Q |
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| T |
27263979 |
ggaagggccctctagctaagaaacacaaagtggttgatcctcctccatcacaaca |
27263925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27270872 - 27270818
Alignment:
| Q |
70 |
ggaaaggccctctagataagaaacacaaggtgtttgatcctcctccatcaaaaca |
124 |
Q |
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| T |
27270872 |
ggaagggccctctagctaagaaacacaaagtggttgatcctcctccatcacaaca |
27270818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 27263778 - 27263734
Alignment:
| Q |
261 |
ttgaggcactaatcaaagtgagggaaaacaaattgccattaaaaa |
305 |
Q |
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| T |
27263778 |
ttgaggcactaatcagagtgagggtaaacaaatcgccaataaaaa |
27263734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 27270671 - 27270627
Alignment:
| Q |
261 |
ttgaggcactaatcaaagtgagggaaaacaaattgccattaaaaa |
305 |
Q |
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| T |
27270671 |
ttgaggcactaatcagagtgagggtaaacaaatcgccaataaaaa |
27270627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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