View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_17 (Length: 361)
Name: NF10104_low_17
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 33505540 - 33505208
Alignment:
| Q |
18 |
atatatgtgatgaattaataaacaggaaatattattgttctattccttttaccgaaaagnnnnnnnnnn-gttaagcaggaggcaaataaccatgtacgt |
116 |
Q |
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| T |
33505540 |
atatatgtgatgaattaataa-caggaaatattattgttctattccttttaccgaaaagaaaaaaaaaaagttaagcaggaggcaaataaccatgtacgt |
33505442 |
T |
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| Q |
117 |
gttgcatgcttgcgttgcatggctattaacacgtggcacctactaatccctcccacgtatcaccctttcggtgtctcatatatattacttagcatcaaag |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33505441 |
gttgcatgcttgcattgcatggctattaacacgtggcacctactaatccctcccacgtatcaccctttcggtgtctcatatatattacttagcatcaaag |
33505342 |
T |
|
| Q |
217 |
agatcaagagaggaaataagaaattaactgcaaacaaacggttatggcgatgaagctcaagtatctatcctccattgctgaggatgttgttgctagatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33505341 |
agatcaagagaggaaataagaaattaactgcaaacaaacggttatggcgatgaagctcaagtatctatcctccattgctgaggatgttgttgctagatgt |
33505242 |
T |
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| Q |
317 |
gcacagtacgtaatattaatactctcctattcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33505241 |
gcacagtacgtaatattaatactctcctattcat |
33505208 |
T |
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