View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_18 (Length: 361)
Name: NF10104_low_18
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 49911106 - 49910833
Alignment:
| Q |
8 |
aagcaaaggaatgatatccaagctcagctaagagcatgtcccagtcccattgtaaatgcaaaagcaaaacaaagtcttcaatcccaatc-ccaaagttga |
106 |
Q |
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| T |
49911106 |
aagcaaaggaatgatatccaagctcagctaagagcatgtcccagtcccattgtaaatgcaaaagcaaaacaaagtcttcaatcccaatttccaaagttga |
49911007 |
T |
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| Q |
107 |
atgcaatgttattctcatcctcctctcccatttccaaaacaacnnnnnnngatatactaatactacttgtacaagactatactcatggattgatatatca |
206 |
Q |
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| T |
49911006 |
atgcaatgttattctcatcctcctctcccatttccaaaacaacaaaaaaagatatactaatactacttgtacaagactatactcatggattgatatatca |
49910907 |
T |
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| Q |
207 |
tgaggagataattaaacatgcagccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgc |
280 |
Q |
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| T |
49910906 |
tgaggagataattaaacatgcaaccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgc |
49910833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 49910796 - 49910742
Alignment:
| Q |
307 |
tgaatgaattgaatttagctggcattttcaaatacaaacacactttttgtaattc |
361 |
Q |
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| T |
49910796 |
tgaatgaattgaatttagctggcattttcaaatacaaacacactttttgtaattc |
49910742 |
T |
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