View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_19 (Length: 356)
Name: NF10104_low_19
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 115 - 344
Target Start/End: Complemental strand, 43921937 - 43921708
Alignment:
| Q |
115 |
aatacgaaattcttgtacatgattatcgatttatctcagtgctgcactttttgtttaattggggaagagggagatttttattaatcaaatttacactaat |
214 |
Q |
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| T |
43921937 |
aatacgaaattcttgtacatgattatcgatttatctcagtgctgcactttttgtttaattggggaagagggagatttttattaatcaaattgacactaat |
43921838 |
T |
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| Q |
215 |
accgtctccgagggatttgaagtttgaactaactagctgagcttatacggcgaagttcttaccactgagttaacacctcaggtgtttggtgattgaccat |
314 |
Q |
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| T |
43921837 |
accgtctccgagggatttgaagtttgaactaagtatctgagcttatacggctaagttcttaccactgagttaacacctcaggtgtctggtgattgaccat |
43921738 |
T |
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| Q |
315 |
caacaccatggcaatctcatattgtttctc |
344 |
Q |
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| T |
43921737 |
caacaccatggcaatctcatattgtttctc |
43921708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43922054 - 43921985
Alignment:
| Q |
1 |
tttcacctctcttattatcatcgatcgcactagaatccgtaattgcaccactagtatcttatcgattcta |
70 |
Q |
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| T |
43922054 |
tttcacctctcttattatcatcgatcgcactagaatccgtaattgcaccactagtatcttatcgattcta |
43921985 |
T |
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