View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_20 (Length: 349)
Name: NF10104_low_20
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 38 - 333
Target Start/End: Original strand, 34048700 - 34049007
Alignment:
| Q |
38 |
caccttataaacatggtgattatgaaactcattatcatata--aaactattttgatatggcttttacaaagcccgcgccac---------tgcactgaac |
126 |
Q |
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| T |
34048700 |
caccttataaacatggtgattatgaaactcattatcatatataaaactattttgatatggcttttacaaagcccgcgccacaacaaatcctgcaatgaac |
34048799 |
T |
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| Q |
127 |
caatctaatcaagattccttctcttttcaataggtttggaaatagacttctccatcacaaaaaagtgcattctcaacccccaaagaaaaatttgtgcaac |
226 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34048800 |
caatctaatcaagattccttctcttgtcaataggcttggaaatagacttctccatcacaaaaaagtgcattctcaacccccaaagaaaaatttgtgcaac |
34048899 |
T |
|
| Q |
227 |
ttttacaagtatatcttaaggagctccttgttcctaattccacagttagaaacaatggcaatgacatgaaccatc-ttagctaaatcctccaactaaact |
325 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34048900 |
ttttacaagtatatcttaaggaactccttgttcctaattccacagttggaaacaatggcaatgacatgaaccatctttagctaaatcctccaactaaact |
34048999 |
T |
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| Q |
326 |
tcaacttg |
333 |
Q |
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|||||||| |
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| T |
34049000 |
tcaacttg |
34049007 |
T |
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