View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_24 (Length: 308)
Name: NF10104_low_24
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_24 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 7173849 - 7173596
Alignment:
| Q |
19 |
agttgtttggttttccatgattggaattagtttctatggcctttggctgtcacttgtatgtatcttaaaatgtttgatggctgctacacaaatttgatga |
118 |
Q |
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| T |
7173849 |
agttgtttggttttccatgattggaattagttaatatggcctttggctgtcacttgtatgtatcttaaaatgtttgatggctgctacacaaatttgatga |
7173750 |
T |
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| Q |
119 |
tgtatgctgcaaaaccgtgtgatgttgggatgtctgaagcaacatgaagacaaagtttcttgaactacagttagagtggctatttctgtcaaatgcaaag |
218 |
Q |
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| T |
7173749 |
tgtatgctgcaaaaccgtgtgatgttgggatgtctgaagcaacatgaagacaaagtttcttgaactacagttagagtggctatttctgtcaaatgcaaag |
7173650 |
T |
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| Q |
219 |
aattgtaattctacactattctacattgttccccaccatcataacagtaatatg |
272 |
Q |
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| T |
7173649 |
aattgtaattctacactattctacattgttccccaccatcataacagtaatatg |
7173596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 7167110 - 7166997
Alignment:
| Q |
53 |
tatggcctttggctgtcacttgtatgtatcttaaaatgtttgatggctgctacacaaatttgatgatgtatgctgcaaaaccgtgtgatgttgggatgtc |
152 |
Q |
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| T |
7167110 |
tatgtcctttggctgtcacttgtgtgtatgttaaaatgtttgatgactgctacaaattttttatgatgtatgctgcaaaactatgtgatgctgggatgac |
7167011 |
T |
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| Q |
153 |
tgaagcaacatgaa |
166 |
Q |
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| T |
7167010 |
tgaagctacatgaa |
7166997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 7168233 - 7168130
Alignment:
| Q |
60 |
tttggctgtcacttgtatgtatcttaaaatgtttgatggctgctacacaaatttgatgatgtatgctgcaaaaccgtgtgatgttgggatgtctgaagca |
159 |
Q |
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| T |
7168233 |
tttggccgtcacttgtgtttatgttaaaatgtttgacgactgctacacaatttt-atgatgtatgctgcaaaaccgcgtgttgttgggatgtctgaagca |
7168135 |
T |
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| Q |
160 |
acatg |
164 |
Q |
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| T |
7168134 |
acatg |
7168130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 11238244 - 11238354
Alignment:
| Q |
24 |
tttggttttccatgattggaattagtttctatggcctttggctgtcacttgtatgtatcttaaaatgtttgatggctgctacacaaatttgatgatgtat |
123 |
Q |
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| T |
11238244 |
tttggttttctaagattggaattaggttccatgtcctttggctgtcacttgtc-gtgtgttaaaatgtttgatgactgttacacaaattttatgatgtat |
11238342 |
T |
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| Q |
124 |
gctgcaaaaccg |
135 |
Q |
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| T |
11238343 |
gctgcaaaaccg |
11238354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 7166995 - 7166943
Alignment:
| Q |
198 |
ctatttctgtcaaatgcaaagaattgtaattctacactattctacattgttcc |
250 |
Q |
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| T |
7166995 |
ctatttctgtcaaatgaaaagaattgtgattctagactgctctacattgttcc |
7166943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 29437 - 29527
Alignment:
| Q |
68 |
tcacttgtatgtatcttaaaatgtttgatggctgctacacaaatttgatgatgtatgctgcaaaaccgtgtgatgttgggatgtctgaagca |
159 |
Q |
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| T |
29437 |
tcacttgtgtgtatgttaaa-tgtttgacgactgctacacaaattttatgatgtatgctgcaaaaccgcctgttgttgagatgtttgaagca |
29527 |
T |
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