View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_26 (Length: 293)
Name: NF10104_low_26
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 7690349 - 7690623
Alignment:
| Q |
1 |
aaatcaggcatatatgacacttgagtcgtctcagatatgccgtttccaaatgcatctttaaggagcaccataattgtagcttttgaaccagcttcgaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7690349 |
aaatcaggcatatatgacacttgagtcgtctcagatatgccgtttccaaatgcatctttaaggagcaccataattgtagcttttgaaccagcttcaaact |
7690448 |
T |
|
| Q |
101 |
catatttcatccccttccatgatgcaacacacaccgatggatacatgttcccttcagtcatacaatattaacataaaacagtaattaatgaacacgtacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7690449 |
catatttcatccccttccatgatgcaacacacaccgatggatacatgttcccttcagtcatacaatattaacataaaacagtaattaatgaacacgtacc |
7690548 |
T |
|
| Q |
201 |
gaaactgaatcaacctacattatgtataacatcatgatatgcaccaactaattcaacttagtgaattcattcata |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7690549 |
gaaactgaatcaacctacattatgtataacatcatgatatgaaccaactaattcaacttagtgaattcattcata |
7690623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 13889286 - 13889560
Alignment:
| Q |
1 |
aaatcaggcatatatgacacttgagtcgtctcagatatgccgtttccaaatgcatctttaaggagcaccataattgtagcttttgaaccagcttcgaact |
100 |
Q |
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|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
13889286 |
aaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataattgtagcttttgaaccagcttcaaact |
13889385 |
T |
|
| Q |
101 |
catatttcatccccttccatgatgcaacacacaccgatggatacatgttcccttcagtcatacaatattaacataaaacagtaattaatgaacacgtacc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||| ||||| || || |||||||| ||| ||| |
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| T |
13889386 |
catatttcatccccttccatgatgcaacacacacagacggatacatgttcccttcaatcatagaataacaacatcaaccattaattaataaacttatacg |
13889485 |
T |
|
| Q |
201 |
gaaactgaatcaacctacattatgtata-acatcatgatatgcaccaactaattcaacttagtgaattcattcat |
274 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||| ||| ||||||| |
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| T |
13889486 |
aaaaccgaatcaaactacattatgtatatacatcatgatatgcactaaccaattcaacttagtaaatgcattcat |
13889560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 14029411 - 14029685
Alignment:
| Q |
1 |
aaatcaggcatatatgacacttgagtcgtctcagatatgccgtttccaaatgcatctttaaggagcaccataattgtagcttttgaaccagcttcgaact |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14029411 |
aaatcaggcatataggacacttcagtcgtctcggatatgccgtttccaaatgcatcttttaggagcaccataattgtagcttttgaaccagcttcaaact |
14029510 |
T |
|
| Q |
101 |
catatttcatccccttccatgatgcaacacacaccgatggatacatgttcccttcagtcatacaatattaacataaaacagtaattaatgaacacgtacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||| ||||| || || |||||||| ||| ||| |
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|
| T |
14029511 |
catatttcatccccttccatgatgcaacacacacagacggatacatgttcccttcaatcatagaataacaacatcaaccattaattaataaacttatacg |
14029610 |
T |
|
| Q |
201 |
gaaactgaatcaacctacattatgtata-acatcatgatatgcaccaactaattcaacttagtgaattcattcat |
274 |
Q |
| |
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|||| ||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||| ||| ||||||| |
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|
| T |
14029611 |
aaaaccgaatcaaactacattatgtatatacatcatgatatgcactaaccaattcaacttagtaaatgcattcat |
14029685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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