View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104_low_28 (Length: 285)
Name: NF10104_low_28
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 14865139 - 14865386
Alignment:
| Q |
19 |
cagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14865139 |
cagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgt |
14865238 |
T |
|
| Q |
119 |
tcaaaaactactccgacggtgaaaacgttctggtgaacgattttcgtcgctacagccgaaactccgccggccataaagaaaccttcaccagctacgctac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14865239 |
tcaaaaactactccgacggtgaaaacgttctggtgaacgatttccgtcgctacagccgaaactccgccggccataaagaaaccttcaccagctacgctac |
14865338 |
T |
|
| Q |
219 |
aaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14865339 |
caacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
14865386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 55977458 - 55977713
Alignment:
| Q |
19 |
cagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgt |
118 |
Q |
| |
|
|||||||| |||||||||| || ||||| ||||||| |||||| || ||||| |||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
55977458 |
cagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctacccggtggacacgactcgt |
55977557 |
T |
|
| Q |
119 |
tcaaaaactactccgacggtgaaaacgttctg--------gtgaacgattttcgtcgctacagccgaaactccgccggccataaagaaaccttcaccagc |
210 |
Q |
| |
|
||||||||||||| ||||| || || |||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
55977558 |
tcaaaaactactcggacggagactac--tctgacggagaggtgaatgatttctgtcgctacagccgaaactctgccggccataaagaaactttcaccaac |
55977655 |
T |
|
| Q |
211 |
t--acgctacaaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagc |
266 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
55977656 |
tacacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagc |
55977713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University