View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_35 (Length: 250)
Name: NF10104_low_35
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1516942 - 1517180
Alignment:
| Q |
1 |
ctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggctt |
100 |
Q |
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| T |
1516942 |
ctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggctt |
1517041 |
T |
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| Q |
101 |
ataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatatagg |
200 |
Q |
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| T |
1517042 |
ataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatatagg |
1517141 |
T |
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| Q |
201 |
ctagctacggctcatcttgtggacacaagtgaacttcat |
239 |
Q |
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| T |
1517142 |
ctagctacggctcatcttgtggacacaagtgaacttcat |
1517180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 2908282 - 2908515
Alignment:
| Q |
8 |
atggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggtatgttccataccactatggcttataat |
105 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||||| |
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| T |
2908282 |
atggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaagtgatttgaggtatgcttcctaccactatggtttataat |
2908381 |
T |
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| Q |
106 |
attaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctcttatttgatgaagtcggcatataggctagc |
205 |
Q |
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| T |
2908382 |
attattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagattgtgacctcttattcgatgaagtcggcatataggctagt |
2908481 |
T |
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| Q |
206 |
tacggctcatcttgtggacacaagtgaacttcat |
239 |
Q |
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| T |
2908482 |
tatcgctcattttgtggacacaagtgaacttcat |
2908515 |
T |
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