View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_37 (Length: 250)
Name: NF10104_low_37
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35558425 - 35558671
Alignment:
| Q |
1 |
cactctagccgtccaatccgcgtcaatgagaatgttcgatgacttgatgtctcgatgaattattgatggaactgcgtaattatggagatactcaattccg |
100 |
Q |
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| T |
35558425 |
cactctagctgtccaatccgcgtcaatgagaatgttcgatgacttgatgtctcgatgaattattgatggaactgcgtaattatggagatactcaattcca |
35558524 |
T |
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| Q |
101 |
cgtgatgcatccaaagcgactttgatcctcattttccaagaattcaataaactactattcttgtcaacgttgtttttgtcgtgcaaatgatcatacaatg |
200 |
Q |
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| T |
35558525 |
cgtgaagcatccaatgcgactttgatcctcattttccaagaattcaataaactactattcttgtcaacgttgtttttgtcgtgcaaatgatcatacaatg |
35558624 |
T |
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| Q |
201 |
caccattcttcatgaactcataaaccaaaagcctttcatctctctcg |
247 |
Q |
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| T |
35558625 |
caccattcttcatgaactcataaaccaaaagcctttcatctttctcg |
35558671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 35555409 - 35555605
Alignment:
| Q |
1 |
cactctagccgtccaatccgcgtcaatgagaatgttcgatgacttgatgtctcgatgaattattgatggaactgcgtaattatggagatactcaattccg |
100 |
Q |
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| T |
35555409 |
cactctagccatccaattcatgtcaatgagaatggttgaagactttatgtctcgatgaattatcgatggaaccgtgtgattatggagatgctcgattccc |
35555508 |
T |
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| Q |
101 |
cgtgatgcatccaaagcgactttgatcctcattttccaagaattcaataaactactattcttgtcaacgttgtttttgtcgtgcaaatgatcataca |
197 |
Q |
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| T |
35555509 |
cgcggagcatccaacgcaattttgatccttattttccaagaattcaataaactactattcttgtcaacgttgtttttgtcatgcaaatgatcataca |
35555605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 31755247 - 31755464
Alignment:
| Q |
29 |
agaatgttcgatgacttgatgtctcgatgaattattgatggaactgcgtaattatggagatactcaattccgcgtgatgcatccaaagcgactttgatcc |
128 |
Q |
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|||||||| |||||||| || |||| |||||||||||| |||||||| |||||||| ||||| || ||||| | ||||||||||||||| | ||| |||| |
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| T |
31755247 |
agaatgtttgatgacttaatatctctatgaattattgaaggaactgcataattatgtagatattctattcctcttgatgcatccaaagcaatttttatcc |
31755346 |
T |
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| Q |
129 |
tcattttccaagaattcaataaactactattcttgtcaacgttgtttttgtcgtgcaaatgatcatacaatgcaccattcttcatgaactcataaaccaa |
228 |
Q |
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| T |
31755347 |
tcattttccatgaattcaacaaattgctacctttttctacattattcttatcatgcaaatgactatgcaatgaaccattcttcatgtaatcatacaccaa |
31755446 |
T |
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| Q |
229 |
aagcctttcatctctctc |
246 |
Q |
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|||||| |||||| |||| |
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| T |
31755447 |
aagcctctcatctttctc |
31755464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 240
Target Start/End: Original strand, 25740341 - 25740531
Alignment:
| Q |
50 |
tctcgatgaattattgatggaactgcgtaattatggagatactcaattccgcgtgatgcatccaaagcgactttgatcctcattttccaagaattcaata |
149 |
Q |
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||||||||||| || | ||| || ||||| ||||| | ||||||||||| | || ||||| || || |||||||| ||||||||||| ||||| || | |
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| T |
25740341 |
tctcgatgaataatcggtggtaccgcgtagttatgaatgtactcaattccccttgcagcatctaatgcaactttgattctcattttccatgaatttaaaa |
25740440 |
T |
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| Q |
150 |
aactactattcttgtcaacgttgtttttgtcgtgcaaatgatcatacaatgcaccattcttcatgaactcataaaccaaaagcctttcatc |
240 |
Q |
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| T |
25740441 |
tgctactatttttttcaacattattcttatcatgcaaatgatcatgtaatgatccattactcatgtactcatacaccaaaagcctctcatc |
25740531 |
T |
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