View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_38 (Length: 248)
Name: NF10104_low_38
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_38 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 7173364 - 7173604
Alignment:
| Q |
10 |
atgaaaaagaattaatcttttcaagcaaatcaactgctactcataagataaatgtgaataaatattcatttgaataaaatcagtgtagcctattgaaact |
109 |
Q |
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| T |
7173364 |
atgaaaaagaattaatcttttcaagcaaatcaactgctactcataagataaatgtgaataaatattcatttgaataaaatcagtgtaggctattgaaact |
7173463 |
T |
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| Q |
110 |
agcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaactaaatccagcttaagcatagaaaacaacgataaaatagtcaaataaca |
209 |
Q |
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| T |
7173464 |
agcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaactaaatccagcttaagcatagaaaacaacgataaaatagtcaaataaca |
7173563 |
T |
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| Q |
210 |
gc--nnnnnnnntcagtgagaaagagagaaaacatattact |
248 |
Q |
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| T |
7173564 |
gcaaaagaaaaatcagtgagaaagagagaaaacatattact |
7173604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 7167915 - 7168051
Alignment:
| Q |
64 |
tgaataaatattcatttgaataaaat--cagtgtagcctattgaaactagcacttcctcggataaagttcaaatgcggaatgaaagcggcattaaacaac |
161 |
Q |
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|||||||||||||||||||||||||| || ||| | |||||||| || ||||||||||| | | |||||| | ||| ||||||| ||||||| || |
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| T |
7167915 |
tgaataaatattcatttgaataaaattacattgttggctattgaacctggcacttcctcgtaaaggattcaaagtcagaacgaaagcgccattaaataat |
7168014 |
T |
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| Q |
162 |
taaatccagcttaagcatagaaaacaacgataaaata |
198 |
Q |
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| T |
7168015 |
gaaatccaacttaagtatagaaaacagtgataaaata |
7168051 |
T |
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