View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_4 (Length: 456)
Name: NF10104_low_4
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 39 - 436
Target Start/End: Complemental strand, 27116815 - 27116418
Alignment:
| Q |
39 |
tgtttgagtgatgataatccctcaggaagtttgccagaagctattagacagttgaaattagacatggaggaaaacagattttgttacataccacctagtg |
138 |
Q |
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| T |
27116815 |
tgtttgagtgatgataatccctcaggaagtttgccagaagctattagacagttgaaattagacatggaggaaaacagattttgttacataccacctagtg |
27116716 |
T |
|
| Q |
139 |
tcaagcaggaaaagcttggttatgttcactatgtcagaaagaaggataaaggtgccctgtcctatgttgctcatgctgattattacattttgcttcgggc |
238 |
Q |
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| T |
27116715 |
tcaagcaggaaaagcttggttatgttcactatgtcagaaagaaggataaaggtgccctgtcctatgttgctcatgctgattattacattttgcttcgggc |
27116616 |
T |
|
| Q |
239 |
ttttgccagagctgcgcatgttgatgacattcggattttgcacattggtgttttgaaccttgaaagaagacttgcttggctggagaaacggattggtcaa |
338 |
Q |
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| T |
27116615 |
ttttgccagagctgcgcatgttgatgacattcggattttgcatattggtgttttgaaccttgaaagaagacttgcttggctggagaaacggattggtcaa |
27116516 |
T |
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| Q |
339 |
tgcttgcatttgaagcctcccaatatttcttgcgagttttgtagtgttagggccactgaaaatggatcagatcatatgatggttgaagatgaactatc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27116515 |
tgcttgcatttgaagcctcccaatatttcttgcgagttttgtagtgttagagccactgaaaatggatcagatcatatgatggatgaagatgaactatc |
27116418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 39 - 436
Target Start/End: Complemental strand, 21183194 - 21182797
Alignment:
| Q |
39 |
tgtttgagtgatgataatccctcaggaagtttgccagaagctattagacagttgaaattagacatggaggaaaacagattttgttacataccacctagtg |
138 |
Q |
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| T |
21183194 |
tgtttgagtgatgataatccctcaggaagtttgccagaagctattagacagttgaaattagacatggaggaaaacagattttgttacattccacctagtg |
21183095 |
T |
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| Q |
139 |
tcaagcaggaaaagcttggttatgttcactatgtcagaaagaaggataaaggtgccctgtcctatgttgctcatgctgattattacattttgcttcgggc |
238 |
Q |
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| T |
21183094 |
tcaagcaggaaaagcttggttatgttcactatgtcagaaagaaggataaaggtgccctgtcctatgttgctcatgctgattattacattttgcttcgggc |
21182995 |
T |
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| Q |
239 |
ttttgccagagctgcgcatgttgatgacattcggattttgcacattggtgttttgaaccttgaaagaagacttgcttggctggagaaacggattggtcaa |
338 |
Q |
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| T |
21182994 |
ttttgccagagctgcgcatgttgatgacattcggattttgcatattggtgttttgaaccttgaaagaagacttgcttggctggagaaacggattggtcaa |
21182895 |
T |
|
| Q |
339 |
tgcttgcatttgaagcctcccaatatttcttgcgagttttgtagtgttagggccactgaaaatggatcagatcatatgatggttgaagatgaactatc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21182894 |
tgcttgcatttgaagcctcccaatatttcttgcgagttttgtagtgttagtgccactgaaaatggatcagatcatatgatggatgaagatgaactatc |
21182797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 91 - 387
Target Start/End: Original strand, 28488029 - 28488322
Alignment:
| Q |
91 |
tgaaattagacatggaggaaaacagattttgttacataccacctagtgtcaagcaggaaaagcttggttatgttcactatgtcagaaagaaggataaagg |
190 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||| | ||||||| | | || |||| ||||||||||||||||||||||||||||||||| |
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| T |
28488029 |
tgaaattagacatggaggaaaacctattttgttatgtaccacctcgcgtcaagccgaagaaccttgattatgttcactatgtcagaaagaaggataaagg |
28488128 |
T |
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| Q |
191 |
tgccctgtcctatgttgctcatgctgattattacattttgcttcgggcttttgccagagctgcgcatgttgatgacattcggattttgcacattggtgtt |
290 |
Q |
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|||| || | || ||||||||||||||||||||||||||||||||| ||| ||||||| ||| || || ||||||| |||||||||| ||||||||| |
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| T |
28488129 |
tgccatgacttacgttgctcatgctgattattacattttgcttcggacttgtgccagaattgcacaagt---tgacattaggattttgcaaattggtgtt |
28488225 |
T |
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| Q |
291 |
ttgaaccttgaaagaagacttgcttggctggagaaacggattggtcaatgcttgcatttgaagcctcccaatatttcttgcgagttttgtagtgtta |
387 |
Q |
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|||| ||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||| ||||||||||||||| |
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| T |
28488226 |
ttgagacttgagaaaagacttgcttggctggagaaacgggttgatcaatgcttgcatttgaaaccttccagtatttcttgtcagttttgtagtgtta |
28488322 |
T |
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