View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_41 (Length: 240)
Name: NF10104_low_41
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1516825 - 1516603
Alignment:
| Q |
1 |
cgaccagatactagaccatgcataagaagaatgatgaccaagcttgcgtatccaacatagcgagtttgaaagcataaatattacgaaagccaagatattt |
100 |
Q |
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| T |
1516825 |
cgaccagatactagaccatgcataagaagaatgatgaccaagcttgcgtatccaacatagcgagtttgaaagcataaatattacgaaagccaagatattt |
1516726 |
T |
|
| Q |
101 |
aaacttcttaggcacaataagctttcgagaagaaaatacctatttttaatattnnnnnnnnngaaagatatcatggtattgacacctttcgagaagtctc |
200 |
Q |
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| T |
1516725 |
aaacttcttaggcacaataagctttcgataagaaaatacctatttttaatattaaaaaaaaagaaagatatcatggtattgacacctttcgagaagtctc |
1516626 |
T |
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| Q |
201 |
tctaaaatcttgagacatgttct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1516625 |
tctaaaatcttgagacatgttct |
1516603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 2903975 - 2903924
Alignment:
| Q |
172 |
catggtattgacacctttcgagaagtctctctaaaatcttgagacatgttct |
223 |
Q |
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| T |
2903975 |
catggtattgacacctttggagaagtctctccaaaatcttgagacatgttct |
2903924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 2908036 - 2907957
Alignment:
| Q |
42 |
gcttgcgtatccaacatagcgagtttgaaagcataaatattacgaaagccaagatatttaaacttcttaggcacaataagctt |
124 |
Q |
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| T |
2908036 |
gcttgcttatccaacatagcgaggttgaaagcataaata---cggaagtcgggatctttaaacttcttaggcacaataagctt |
2907957 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 2892488 - 2892437
Alignment:
| Q |
172 |
catggtattgacacctttcgagaagtctctctaaaatcttgagacatgttct |
223 |
Q |
| |
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|||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
2892488 |
catggtattgacacctttggagaagtttctccaaaatcttgagacatgttct |
2892437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 2887860 - 2887811
Alignment:
| Q |
172 |
catggtattgacacctttcgagaagtctctctaaaatcttgagacatgtt |
221 |
Q |
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|||||||||||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
2887860 |
catggtattgacacctttggagaagcctctccaaaatcttgagacatgtt |
2887811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 48871533 - 48871584
Alignment:
| Q |
172 |
catggtattgacacctttcgagaagtctctctaaaatcttgagacatgttct |
223 |
Q |
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|||||||||||||||||| |||||||||||| |||| ||| ||||| ||||| |
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| T |
48871533 |
catggtattgacacctttggagaagtctctccaaaaccttcagacaagttct |
48871584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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