View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104_low_49 (Length: 230)

Name: NF10104_low_49
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104_low_49
NF10104_low_49
[»] chr7 (2 HSPs)
chr7 (1-139)||(8694745-8694883)
chr7 (138-230)||(8694627-8694719)
[»] chr3 (42 HSPs)
chr3 (4-116)||(11408711-11408823)
chr3 (141-230)||(11408875-11408964)
chr3 (138-230)||(28079482-28079574)
chr3 (1-116)||(27998504-27998619)
chr3 (152-230)||(28047509-28047587)
chr3 (1-134)||(28472379-28472512)
chr3 (1-134)||(28492420-28492553)
chr3 (1-134)||(28513401-28513534)
chr3 (138-222)||(28178105-28178189)
chr3 (1-126)||(27464435-27464560)
chr3 (5-114)||(28079322-28079431)
chr3 (141-230)||(28492297-28492386)
chr3 (141-221)||(27909879-27909959)
chr3 (4-114)||(28129867-28129977)
chr3 (141-219)||(28513289-28513367)
chr3 (1-138)||(26117292-26117429)
chr3 (1-138)||(26145296-26145433)
chr3 (141-230)||(28472256-28472345)
chr3 (149-221)||(27998667-27998739)
chr3 (1-67)||(27962782-27962848)
chr3 (4-114)||(28143795-28143905)
chr3 (5-111)||(28177954-28178060)
chr3 (149-230)||(28130039-28130120)
chr3 (1-139)||(17749388-17749526)
chr3 (1-139)||(19050708-19050846)
chr3 (1-115)||(27909712-27909826)
chr3 (150-230)||(28143968-28144048)
chr3 (1-138)||(26239556-26239693)
chr3 (152-228)||(17749272-17749348)
chr3 (152-228)||(19050592-19050668)
chr3 (152-223)||(27464311-27464382)
chr3 (1-139)||(18081280-18081418)
chr3 (5-60)||(28047349-28047404)
chr3 (8-111)||(26183763-26183866)
chr3 (1-68)||(26624397-26624464)
chr3 (152-219)||(27962960-27963027)
chr3 (1-63)||(27343891-27343953)
chr3 (1-67)||(27370189-27370255)
chr3 (1-58)||(18723481-18723538)
chr3 (2-126)||(27401421-27401545)
chr3 (8-111)||(26212370-26212473)
chr3 (2-68)||(18031534-18031600)
[»] chr4 (4 HSPs)
chr4 (5-134)||(9330325-9330454)
chr4 (5-134)||(9384108-9384237)
chr4 (152-228)||(9330204-9330280)
chr4 (152-228)||(9383987-9384063)
[»] chr5 (2 HSPs)
chr5 (5-134)||(26027270-26027399)
chr5 (152-211)||(26027166-26027225)
[»] scaffold0067 (2 HSPs)
scaffold0067 (1-119)||(23870-23988)
scaffold0067 (144-230)||(24040-24126)
[»] scaffold1344 (1 HSPs)
scaffold1344 (1-63)||(578-640)
[»] scaffold0854 (1 HSPs)
scaffold0854 (1-58)||(4533-4590)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-58)||(73305-73362)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 8694883 - 8694745
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8694883 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcatttaagatgcatttcacaactacaatgcctc 8694784  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgtc 139  Q
     ||||||||||||||||||||||||||||||||||||||    
T  8694783 ttagacactaagcatattgattctcatgtatcaattgtc 8694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 8694719 - 8694627
Alignment:
Q  138 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8694719 tcaaaggaatggataatttggaagaattgtgcaatggtcctctttcctttgactctctgaaaagtttagagaagctgtacatcaaggattgta 8694627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 11408711 - 11408823
Alignment:
Q  4 atggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgta 103  Q
    ||||||||||||||||||||| || |||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |     
T  11408711 atggagaaatatcatacctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttcatttaagatgcatttcacaactaaaatgcctcatt 11408810  T
Q  104 gacactaagcata 116  Q
    ||||||| |||||    
T  11408811 gacactatgcata 11408823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 11408875 - 11408964
Alignment:
Q  141 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11408875 aaggaatggataatttggaagaattgttcaatggctctctttcctttgactctctgaacagtttagagaagctgtccatcaaggattgta 11408964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 28079482 - 28079574
Alignment:
Q  138 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||  |||||||    
T  28079482 tcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaagttgtccatcagtgattgta 28079574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 27998504 - 27998619
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||| ||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||  ||| |||| |||||||||| |||||||||||    
T  27998504 gggagggagaaatatcatacctgagatgattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaattacaatgcctc 27998603  T
Q  101 gtagacactaagcata 116  Q
     | |||||||||||||    
T  27998604 attgacactaagcata 27998619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 28047509 - 28047587
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28047509 aatttggaagaattgtgcaatggtcctctttcctttgactctctgaacagtttagaggagctgtccatcaaggattgta 28047587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28472512 - 28472379
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    ||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |||||| |||| ||  | |||||||||||||||||||||    
T  28472512 gggatggagaaatatgatgcctgagattgttcctatggaccatggtatgaatgatctagtcgagcttagtttgagtagtatttcacaactacaatgcctc 28472413  T
Q  101 gtagacactaagcatattgattctcatgtatcaa 134  Q
     | |||||||| |||| ||| ||||  |||||||    
T  28472412 attgacactaaacatactgaatctctagtatcaa 28472379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28492553 - 28492420
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||  ||||| |||| ||  | |||||||||||||||||||||    
T  28492553 gggatggagaaatatgatgcctgagattgttcctatggatcatggtatgaatgatctagtcaagcttagtttgagtagtatttcacaactacaatgcctc 28492454  T
Q  101 gtagacactaagcatattgattctcatgtatcaa 134  Q
     | |||||||| |||| ||| ||||  |||||||    
T  28492453 attgacactaaacatactgaatctctagtatcaa 28492420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 28513534 - 28513401
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    ||||||||||||||| || ||||| ||||||||||| |||  |||||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  28513534 gggatggagaaatatgattcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcatttcacaactacaatgcctc 28513435  T
Q  101 gtagacactaagcatattgattctcatgtatcaa 134  Q
     | ||||| || ||||| || ||||| |||||||    
T  28513434 attgacaccaaacatatcgaatctcaagtatcaa 28513401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 28178105 - 28178189
Alignment:
Q  138 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaa 222  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  28178105 tcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctgtccatcaa 28178189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27464560 - 27464435
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||| | || |||||||||  | || ||||||    
T  27464560 gggatggagaaacatcatacctgagattgttcctatggatcatggtatgaatgatctagtcgagcttaatttgatatccatttcacagttgcactgcctc 27464461  T
Q  101 gtagacactaagcatattgattctca 126  Q
     | |||||| |||||| |||||||||    
T  27464460 attgacactcagcatactgattctca 27464435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 28079322 - 28079431
Alignment:
Q  5 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtag 104  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||   || |||| |||||||||| |||| |||||| | |    
T  28079322 tggagaaatatcatacctgatattgttccaatggatcatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgcctcattg 28079421  T
Q  105 acactaagca 114  Q
    ||||||||||    
T  28079422 acactaagca 28079431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 28492386 - 28492297
Alignment:
Q  141 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||    
T  28492386 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgta 28492297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 27909879 - 27909959
Alignment:
Q  141 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatca 221  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| | ||||||||||    
T  27909879 aaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagaggatctgtccatca 27909959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 28129867 - 28129977
Alignment:
Q  4 atggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgta 103  Q
    ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |||| |||||| |     
T  28129867 atggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcatt 28129966  T
Q  104 gacactaagca 114  Q
    |||||||||||    
T  28129967 gacactaagca 28129977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 28513367 - 28513289
Alignment:
Q  141 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccat 219  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||    
T  28513367 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccat 28513289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26117429 - 26117292
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| |||||||| ||||  ||   |||||||||||||| |||||     
T  26117429 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgcctt 26117330  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgt 138  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
T  26117329 gtagacactaaacatattaattctcaagtaccaattgt 26117292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26145433 - 26145296
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||| |||||| |||| || ||||| |||||||| ||||| ||||||||||||||| ||||||||| | | |||   |||||||||||||| |||||     
T  26145433 gggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgccta 26145334  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgt 138  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
T  26145333 gtagacactaaacatattaattctcaagtaccaattgt 26145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 28472345 - 28472256
Alignment:
Q  141 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||    
T  28472345 aaggaatggataatttggaagaattgttcagcggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgta 28472256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 27998667 - 27998739
Alignment:
Q  149 gataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatca 221  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  27998667 gataatttggaagaattatgcaatggtcctctttcctttgactctctgaacagtttagagaagctgtacatca 27998739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27962782 - 27962848
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 67  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
T  27962782 gggatggagaaatatcatacctgagattgttcctatggagcatggtatgaatgatctagtcgagctt 27962848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 28143795 - 28143905
Alignment:
Q  4 atggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgta 103  Q
    ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |||| |||||| |     
T  28143795 atggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaattacagtgcctcatt 28143894  T
Q  104 gacactaagca 114  Q
    || ||||||||    
T  28143895 gatactaagca 28143905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 28177954 - 28178060
Alignment:
Q  5 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtag 104  Q
    |||||||| ||| ||||||||||||||||| | ||||||||||||||||||||| | |||||| |||| |||| |||||||||| |||| |||||| | |    
T  28177954 tggagaaacatcgtacctgagattgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatttcacaattacagtgcctcattg 28178053  T
Q  105 acactaa 111  Q
    |||||||    
T  28178054 acactaa 28178060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 28130039 - 28130120
Alignment:
Q  149 gataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || || |||||||||  |||||||    
T  28130039 gataatttggaagaattgttcaatggtcctctttcctttgactctctgaaaagtttaaaggagttgtccatcagtgattgta 28130120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 17749526 - 17749388
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  ||||||||||| |  ||||||    
T  17749526 gggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaactgcggtgcctc 17749427  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgtc 139  Q
     | |||||||||||||||| |||||| ||| ||| ||||    
T  17749426 attgacactaagcatattgcttctcaagtaccaaatgtc 17749388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 19050846 - 19050708
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  ||||||||||| |  ||||||    
T  19050846 gggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaactgcggtgcctc 19050747  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgtc 139  Q
     | |||||||||||||||| |||||| ||| ||| ||||    
T  19050746 attgacactaagcatattgcttctcaagtaccaaatgtc 19050708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 27909712 - 27909826
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||||||||||||||||||||||  ||||| |  | |||||||||||||||||||||||||||   || |||| |||||||||| |||| |||||     
T  27909712 gggatggagaaatatcatacctgagatgattcctttgaaacatggtatgaatgatctagttgagcttgaattgagatccatttcacaattacagtgcctt 27909811  T
Q  101 gtagacactaagcat 115  Q
     | ||||||||||||    
T  27909812 attgacactaagcat 27909826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 28143968 - 28144048
Alignment:
Q  150 ataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||   |||||||||| |||||||| | |||||||    
T  28143968 ataatttggaagaattgttcaatggtcctctttcctttgactctctgaactttttagagaagttgtccatccaagattgta 28144048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26239693 - 26239556
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| || |||||| | | | |   |||||||||||||| | |||     
T  26239693 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtacctt 26239594  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgt 138  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
T  26239593 gtagacactaaacatattaattctcaagtaccaattgt 26239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 17749348 - 17749272
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 228  Q
    |||||| ||||||||| |||||  |||||||| ||||||||||| || |||||||||||| ||||||||||||||||    
T  17749348 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattg 17749272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 19050668 - 19050592
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 228  Q
    |||||| ||||||||| |||||  |||||||| ||||||||||| || |||||||||||| ||||||||||||||||    
T  19050668 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattg 19050592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 27464382 - 27464311
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaag 223  Q
    |||||||||||||||| ||||| |||| |||||||||||||||| || | |||||||||| |||||||||||    
T  27464382 aatttggaagaattgttcaatggtcctgtttcctttgactctctaaacaatttagagaagttgtccatcaag 27464311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 18081418 - 18081280
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    ||||||||||||| |||| || || ||||||||||| ||||| ||||||||||||||| ||||||||| ||| | ||    |||||||||||| | ||||    
T  18081418 gggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctc 18081319  T
Q  101 gtagacactaagcatattgattctcatgtatcaattgtc 139  Q
     || ||| | | |||||||||||||| ||| ||| ||||    
T  18081318 atatacattgaacatattgattctcaagtaccaactgtc 18081280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 28047349 - 28047404
Alignment:
Q  5 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagt 60  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||    
T  28047349 tggagaaatatcatacctgatattgttcctttggatcatggtatgaataatctagt 28047404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 26183866 - 26183763
Alignment:
Q  8 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 107  Q
    |||||| |||| || ||||| |||||||| || || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
T  26183866 agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26183767  T
Q  108 ctaa 111  Q
    ||||    
T  26183766 ctaa 26183763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 26624397 - 26624464
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 68  Q
    ||||||||||||| |||| ||||||||||||||||| || |  |||||||||||| | ||||||||||    
T  26624397 gggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttc 26624464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 27962960 - 27963027
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccat 219  Q
    |||||||||||||||| ||||| |||| | |||||||||||| |||| ||||||||||| || |||||    
T  27962960 aatttggaagaattgttcaatggtcctttgtcctttgactctttgaacagtttagagaatctttccat 27963027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27343891 - 27343953
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 63  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  27343891 gggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatctaattga 27343953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27370189 - 27370255
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 67  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||| ||||| ||||||||    
T  27370189 gggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt 27370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18723538 - 18723481
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 58  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
T  18723538 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 18723481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 27401545 - 27401421
Alignment:
Q  2 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcg 101  Q
    |||||||||||| |||| |||||| | |||||||| ||  |||| ||||||||||| ||| ||||||   |   |||   |||| ||||||| ||||||     
T  27401545 ggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatcttgttaagcttcacctgtcatggggttcagaactacagtgcctca 27401446  T
Q  102 tagacactaagcatattgattctca 126  Q
    |||||||||| ||||||||||||||    
T  27401445 tagacactaaacatattgattctca 27401421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 26212473 - 26212370
Alignment:
Q  8 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 107  Q
    |||||| |||| || ||||| ||||||||  | || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
T  26212473 agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26212374  T
Q  108 ctaa 111  Q
    ||||    
T  26212373 ctaa 26212370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 18031600 - 18031534
Alignment:
Q  2 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 68  Q
    |||||||||||| |||| || ||||| |||||||| ||  ||||||||||||||||  |||||||||    
T  18031600 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttc 18031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 9330454 - 9330325
Alignment:
Q  5 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtag 104  Q
    |||||||| ||||||||||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||| |||||||| | |    
T  9330454 tggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattg 9330355  T
Q  105 acactaagcatattgattctcatgtatcaa 134  Q
    |||||| ||||| ||| ||||| |||||||    
T  9330354 acactacgcatactgaatctcaagtatcaa 9330325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 9384237 - 9384108
Alignment:
Q  5 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtag 104  Q
    |||||||| ||||||||||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||| |||||||| | |    
T  9384237 tggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaactaaaatgcctcattg 9384138  T
Q  105 acactaagcatattgattctcatgtatcaa 134  Q
    |||||| ||||| ||| ||||| |||||||    
T  9384137 acactacgcatactgaatctcaagtatcaa 9384108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 9330280 - 9330204
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 228  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  9330280 aatttggaagaattgttcaatggtcctctttcctttgactctttgaacagtttagagaagctgtccatcaaggattg 9330204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 9384063 - 9383987
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 228  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  9384063 aatttggaagaattgttcaatggtcctctttcctttgactctttgaacagtttagagaagctgtccatcaaggattg 9383987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 26027399 - 26027270
Alignment:
Q  5 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtag 104  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||  ||| |||| |||||||||| |||| | |||| |      
T  26027399 tggagaaatatcatgcctgagattgttcatatggatcatggtatgaatgatctagtcgagctttctttgagatccatttcacaattacagtacctcatta 26027300  T
Q  105 acactaagcatattgattctcatgtatcaa 134  Q
    ||||||||| || ||| ||||| |||||||    
T  26027299 acactaagcctactgaatctcaagtatcaa 26027270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 26027225 - 26027166
Alignment:
Q  152 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaag 211  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||    
T  26027225 aatttggaagaattgttcaatggtcctctttcctttgactctctcaacagtttagagaag 26027166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 23870 - 23988
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 100  Q
    ||||||||||||| |||||||  |||||||| |||| ||||| |||||||| ||| ||||||| ||| |||| || |||||||||||||| |  | ||||    
T  23870 gggatggagaaatctcataccccagattgtttctatggatcaaggtatgaaagatatagttgaacttagtttgagttgcatttcacaacttcggtacctc 23969  T
Q  101 gtagacactaagcatattg 119  Q
    || ||||| ||| ||||||    
T  23970 gttgacacgaaggatattg 23988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 24040 - 24126
Alignment:
Q  144 gaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 230  Q
    ||||||| |||||||||||| |||  |||| |||  |||||||||||| |||||| | |||| ||||| | || |||||||||||||    
T  24040 gaatggaaaatttggaagaactgtttaatggtcccgtttcctttgactttctgaagaatttacagaagatatcaatcaaggattgta 24126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 578 - 640
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 63  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
T  578 gggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatctaattga 640  T

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Target: scaffold0854 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4590 - 4533
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 58  Q
    ||||||||||||| |||| |||| |||||||||||| ||| ||||||||||| |||||    
T  4590 gggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatcta 4533  T

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Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 73362 - 73305
Alignment:
Q  1 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 58  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
T  73362 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 73305  T

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