View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_51 (Length: 216)
Name: NF10104_low_51
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 3686306 - 3686449
Alignment:
| Q |
15 |
atgaaacgatgataataataagatagacatgaaac-gatgatat------atggcataaaccatatatagtactaacatagtaagaacaatttagaaaac |
107 |
Q |
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| T |
3686306 |
atgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaaggcataaaccatatataatactaacatagtaagaacaatttagaaaac |
3686405 |
T |
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| Q |
108 |
aaaagcacaagatccctttcaaatgatgatacaatgaagaagaa |
151 |
Q |
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| T |
3686406 |
aaaagcacaagatccctttcaaatgatgatacaatgaaaaagaa |
3686449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
| Q |
63 |
ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat |
137 |
Q |
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| T |
3687100 |
ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat |
3687028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 3686472 - 3686502
Alignment:
| Q |
168 |
caactttgttttacgatcttgctatccccct |
198 |
Q |
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| T |
3686472 |
caactttgttttacgatcttgctatccccct |
3686502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
| Q |
79 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
138 |
Q |
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| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
41979749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
| Q |
82 |
aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat |
134 |
Q |
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| T |
4432410 |
aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat |
4432462 |
T |
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