View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_6 (Length: 435)
Name: NF10104_low_6
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 33 - 435
Target Start/End: Original strand, 10790030 - 10790432
Alignment:
| Q |
33 |
ttggttcactatgttgtaacttatgagagtcttaactttttccggctttccgctatctaaatcttagttggtcaaagaatttgataatttagtcttacat |
132 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10790030 |
ttggttcactatattgtaacttatgagagtcttaattttttccggctttctgctacctaaatcttagttggtcaaagaatttgataatttagtcttacat |
10790129 |
T |
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| Q |
133 |
cacagtcaacaaatgaatgattaaagtgacactatatttgaatacgttgtgtagtagtaattcattagcagtaggcaatggacctaagccttatagttgt |
232 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10790130 |
cacagtcaacaaatgaatgattaaagtgacactagatttgaatacgttgtgtagtagtaattcattagcagtaggcaatggacctaagccttatagttgt |
10790229 |
T |
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| Q |
233 |
gttgtataattcattagcagtaggcactggacctaagtcttataattgatcccttttatttgtaaacacgccaattccctttttggaatacactacattg |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
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| T |
10790230 |
gttgtataattcattagcagtaggcactggacctaagtcttataattgatcccttttatttctagacacgccaactccctttttggaatacactacattg |
10790329 |
T |
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| Q |
333 |
gtaactgccaaacgaactgatcagcagctacaataacactagatgcctgcagaccaatcgaaatctatacatgttgaactgagatgaatattgaaaggga |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10790330 |
gtaactgccaaacgaactgatcagcagctacaataacactagatgcccgcagaccaatcgaaatttatacatgttgaactgagatgaatattgaaaggga |
10790429 |
T |
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| Q |
433 |
aac |
435 |
Q |
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||| |
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| T |
10790430 |
aac |
10790432 |
T |
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