View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104_low_9 (Length: 421)
Name: NF10104_low_9
Description: NF10104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 40143078 - 40143397
Alignment:
| Q |
1 |
tgggtagatgaaatctcatcattggaagaaaagtgggcagcaatagtatcaattctgcgtttcacgaactcattctccatttctaattaacgtggttctc |
100 |
Q |
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| T |
40143078 |
tgggtagatgaaatatcttcattggaagcaaagtgggcagcaatagtatcaagtctgcgtttcacgaactcattctccatttctagttaacgtggttctc |
40143177 |
T |
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| Q |
101 |
aaagacttcacataataaatggataatgcagaatgtggcacatatatggaggggaagtgaattgtgtgaataggagatatttttatgac-nnnnnnnntc |
199 |
Q |
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| T |
40143178 |
aaagacttcacataataaatggataatgcagaatgtggcacatatatggaggggaagtgaattgtgtgaataggagatatttttatgacaaaaaaaaatc |
40143277 |
T |
|
| Q |
200 |
gtaagtgggacctaatcgatgtaaatagtatgtccggaaagagacaaagatagatttcacaaggactatgctagctagctaggaacaaaacatatcagtt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
40143278 |
gtaagtgggacctaatcgatgtaaatagtatgtccggaaagagacaaagatagatttcacaaggactgt----gctagctaggaacaaaacatatcagtt |
40143373 |
T |
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| Q |
300 |
tccgttggcaatttaaactcttca |
323 |
Q |
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| T |
40143374 |
tccgttggcaatttaaactcttca |
40143397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 40143421 - 40143468
Alignment:
| Q |
352 |
gtggaatatgattttcatttagattatcaatgcacttcaattcatatc |
399 |
Q |
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| T |
40143421 |
gtggaatatgattttcatttatattatcaatgcacttcaattcatatc |
40143468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 28174715 - 28174679
Alignment:
| Q |
47 |
tatcaattctgcgtttcacgaactcattctccatttc |
83 |
Q |
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| T |
28174715 |
tatcaattctgcgtttcaccaactaattctccatttc |
28174679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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