View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10105_1 (Length: 869)

Name: NF10105_1
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10105_1
NF10105_1
[»] chr8 (5 HSPs)
chr8 (23-854)||(42078515-42079345)
chr8 (429-763)||(23519737-23520071)
chr8 (137-341)||(23520176-23520381)
chr8 (26-115)||(21233002-21233086)
chr8 (126-240)||(11220410-11220524)
[»] chr1 (15 HSPs)
chr1 (126-763)||(41488721-41489376)
chr1 (506-762)||(29806682-29806937)
chr1 (126-388)||(45433813-45434076)
chr1 (127-366)||(29806302-29806542)
chr1 (126-384)||(16476724-16476983)
chr1 (505-751)||(16477120-16477364)
chr1 (492-767)||(45434197-45434471)
chr1 (25-115)||(21265982-21266070)
chr1 (26-112)||(336898-336981)
chr1 (39-90)||(9538424-9538475)
chr1 (191-390)||(22097074-22097273)
chr1 (26-115)||(6834845-6834933)
chr1 (29-90)||(29387749-29387810)
chr1 (44-115)||(36075277-36075344)
chr1 (490-571)||(32938508-32938588)
[»] chr4 (9 HSPs)
chr4 (180-767)||(19126448-19127060)
chr4 (127-389)||(14156732-14156995)
chr4 (23-124)||(41947387-41947488)
chr4 (476-767)||(14165985-14166276)
chr4 (190-389)||(8280620-8280817)
chr4 (23-91)||(8362680-8362749)
chr4 (29-81)||(49496928-49496980)
chr4 (23-60)||(10345717-10345754)
chr4 (129-239)||(12719893-12720004)
[»] chr3 (7 HSPs)
chr3 (127-681)||(55255570-55256141)
chr3 (476-763)||(14166878-14167164)
chr3 (23-124)||(15997423-15997521)
chr3 (26-115)||(16974248-16974335)
chr3 (26-112)||(46405626-46405709)
chr3 (28-112)||(5025647-5025728)
chr3 (44-112)||(16473999-16474064)
[»] chr7 (9 HSPs)
chr7 (387-766)||(20187227-20187605)
chr7 (217-341)||(20187037-20187161)
chr7 (25-115)||(10290430-10290518)
chr7 (24-88)||(48655602-48655666)
chr7 (609-751)||(6739032-6739172)
chr7 (23-124)||(12197450-12197549)
chr7 (23-91)||(9741539-9741608)
chr7 (26-112)||(15875069-15875153)
chr7 (206-239)||(6739558-6739591)
[»] scaffold1532 (1 HSPs)
scaffold1532 (218-555)||(1-354)
[»] scaffold1838 (1 HSPs)
scaffold1838 (179-306)||(1180-1307)
[»] scaffold0618 (1 HSPs)
scaffold0618 (26-112)||(5080-5163)
[»] chr2 (4 HSPs)
chr2 (26-112)||(40446274-40446357)
chr2 (25-124)||(16132339-16132433)
chr2 (26-115)||(12775949-12776036)
chr2 (25-110)||(32736617-32736699)
[»] chr5 (4 HSPs)
chr5 (23-73)||(42859657-42859707)
chr5 (26-112)||(535773-535857)
chr5 (209-259)||(29614091-29614141)
chr5 (44-115)||(40686280-40686347)
[»] scaffold0413 (1 HSPs)
scaffold0413 (25-81)||(7659-7715)
[»] chr6 (4 HSPs)
chr6 (39-115)||(10752832-10752907)
chr6 (26-112)||(34635229-34635313)
chr6 (44-112)||(25003865-25003930)
chr6 (779-854)||(17393245-17393320)
[»] scaffold0013 (1 HSPs)
scaffold0013 (765-854)||(42879-42968)
[»] scaffold0657 (1 HSPs)
scaffold0657 (26-112)||(5460-5544)


Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 23 - 854
Target Start/End: Original strand, 42078515 - 42079345
Alignment:
Q  23 gtgaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattggagcgtta 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  42078515 gtgaagtttctcgcttataaaataaattgttgaacaactaagtgacaagttaagaaaataatttaaaaa-aaaatatgtatataaaatattggagcgtta 42078613  T
Q  123 caagatttaaggcaatatgcaacgcagcttgactatcacatataacgtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaa 222  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42078614 caagatttgaggcaatatgcaacgcagattgactatcacatataacgtcgttgaatgtgcttcctcgaattgaagttccttaagtaactgtttcaaccaa 42078713  T
Q  223 atgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttc 322  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  42078714 atgagctcacatgttactagtgtcatgaccctatattcgacctctacgcttgatcttgcagttacattttgtttcttacccttccagaatatcaggtttc 42078813  T
Q  323 cgccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcatctaagtatgttatttatcctcataaatgtggcnn 422  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||      
T  42078814 cgccaacaaatacacagtatccaaaaatagattgtctatcaatggatgaacttgcccaatcagcatctaagtatgttgtttatcctcgtaaatgtggcct 42078913  T
Q  423 nnnnnnggagcaccttcgatgtatttaaaaatctgaattaaagtatttgtattttcttgacatggagaattaaaaattggcttaccacactaactgcaaa 522  Q
          |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42078914 gtttttggagcaccttcgatgtatttaagaatccgaattaaagtatttgtgttttcttgacaaggagaattaaaaattggcttaccacactaactgcaaa 42079013  T
Q  523 ggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaatatgatagaggct-ccctttattaggttgaag 621  Q
    |||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  42079014 ggaaatgtttggacgagtaattgtgagataattcaatttttccaaccaaattcttatatcttattgaatctgatagaggctcccctttattaggttgaag 42079113  T
Q  622 tttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttctttttgtgaaattacaat 721  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42079114 tctgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttc-ttttgtgaaattacaat 42079212  T
Q  722 accatccttggattgggctacctcaatacctaacaagtaacgaagtattggttttggtactcgtattcctattcttgatgaaccttggctaaataatggt 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42079213 accatccttggattgggctacctcaatacctaacaagtaacgaagtattggttttggtactcgtattcctattcttgatgaaccttggctaaataatggt 42079312  T
Q  822 gagcgtattgacggcaatattccaggagctcat 854  Q
    |||||||||||||| ||||||| ||||||||||    
T  42079313 gagcgtattgacggtaatattctaggagctcat 42079345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 429 - 763
Target Start/End: Complemental strand, 23520071 - 23519737
Alignment:
Q  429 ggagcaccttcgatgtatttaaaaatctgaattaaagtatttgtattttcttgacatggagaattaaa-aattggcttaccacactaactgcaaaggaaa 527  Q
    |||||||||| ||||||||||| |||  ||||||||  |||  | | |||||| || | |||||| || |||| |||||| ||||||||||||||| |||    
T  23520071 ggagcacctttgatgtatttaagaattcgaattaaaacattcatgtattcttggcaagaagaatttaataattagcttacaacactaactgcaaagaaaa 23519972  T
Q  528 tgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaatatgatagaggctccctttattag-gttgaagtttga 626  Q
    ||| |||||||| ||||||||||||||| |||||||| ||||||  |  ||||||||  |||||||||||||||||||   ||||   || |||| ||||    
T  23519971 tgtttggacgagggattgtgagataattcaatttttc-aaccaatctcctatatcttcctgaatatgatagaggctcctcctatttttgtagaagcttga 23519873  T
Q  627 catttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttctttttgtgaaattacaataccat 726  Q
    |||||||||||||  || |||||| |||||||  | |||||||||  |||||||| | ||||| |||||| |||||| ||| ||||||||||||||||||    
T  23519872 catttggatccataggagtatcaactggcttggaaatcaatagaccagtttcttcaagaatatccatagcgtatttccttt-gtgaaattacaataccat 23519774  T
Q  727 ccttggattgggctacctcaatacctaacaagtaacg 763  Q
    ||||||||||||||||||||||||| || ||||||||    
T  23519773 ccttggattgggctacctcaatacccaaaaagtaacg 23519737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 137 - 341
Target Start/End: Complemental strand, 23520381 - 23520176
Alignment:
Q  137 atatgcaacgcagcttgactatcacatataa-cgtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatgagctcacatg 235  Q
    |||||||| || |||||| |||||||||||  |||| |||  | |||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||    
T  23520381 atatgcaaagcggcttgattatcacatataggcgtcattggttatgcttcttcgaattgaagttccttgagtaactgcttcaaccaaatgagttcacatg 23520282  T
Q  236 ttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccgccaacaagtac 335  Q
    |||||||||||||| ||||||||||| |||| |||||||||| ||||  ||||||| ||||||||| ||||||| ||||||||||||| |||||||||||    
T  23520281 ttactagtgtcatgaccctatattcggcctcaacgcttgatcttgcaactacatttggtttcttactcttccaggatatcagatttcctccaacaagtac 23520182  T
Q  336 acaata 341  Q
    ||||||    
T  23520181 acaata 23520176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 21233002 - 21233086
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    ||||||||||| ||||||||||||||||||||||  | ||||||| |||||||||| |||||||||     ||| |||||||||||||||    
T  21233002 aagtttctcgcatataaaataaattgttgaacaatcaggtgacaactcaagaaaatcatttaaaaa-----tacatatataaaatattgg 21233086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 11220524 - 11220410
Alignment:
Q  126 gatttaaggcaatatgcaacgcagcttgactatcacatataacgtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatg 225  Q
    ||||| ||| |||||||||  || ||||| |||||||||||  ||| |||   ||||||| | ||||||||| | |||||||||||  ||||||||||||    
T  11220524 gatttcaggaaatatgcaatacaacttgattatcacatatagtgtcattggtcgtgcttcttcgaattgaagcttcttaagtaactaattcaaccaaatg 11220425  T
Q  226 agctcacatgttact 240  Q
    |||||| ||||||||    
T  11220424 agctcatatgttact 11220410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 126 - 763
Target Start/End: Original strand, 41488721 - 41489376
Alignment:
Q  126 gatttaaggcaatatgcaacgcagcttgactatcacatataa-cgtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaat 224  Q
    ||||| |||| |||||||||||||||||| |||||||||||| |||| |||   ||||||| | |||||||||||||||||||| ||| |||||||||||    
T  41488721 gatttgaggcgatatgcaacgcagcttgattatcacatataagcgtcattggtcgtgcttcttcgaattgaagttccttaagtagctgcttcaaccaaat 41488820  T
Q  225 gagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccg 324  Q
    ||| |||||||||||||||  ||||||| | |||||  ||||  | ||||||| ||||  ||||||||||||||||| ||||||| ||||||| |||||     
T  41488821 gagttcacatgttactagtaccatggccttgtattctgcctcagcacttgatcttgcaactacattttgtttcttactcttccaggatatcaggtttcct 41488920  T
Q  325 ccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcatctaagta----------------tgttatttatcct 408  Q
    ||||||||||| ||||| ||| || | ||  |||||||||||| ||||| ||| || ||||||||| ||||                |||  ||||||||    
T  41488921 ccaacaagtacgcaatacccagaagtggaccgtctatcaatgggtgaacctgcccagtcagcatctgagtaaccaactatctgagtatgtcctttatcct 41489020  T
Q  409 cataaatgtggcnnnnnnnnggagcaccttc-gatgtatttaaaaatctgaattaaagtatttgtattttcttgacatggagaattaaa-aattggctta 506  Q
    |||||||| | |        ||||||||||  ||||||||||| |||  ||||||||| |||  | | |||||| || |||||||| || ||||||||||    
T  41489021 cataaatgagaccttttcccggagcaccttttgatgtatttaagaattcgaattaaagcattcatgtgttcttggcaaggagaatttaagaattggctta 41489120  T
Q  507 ccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaatatgatagaggct-cc 605  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||  |   |||||||  ||||| ||||| ||||| ||    
T  41489121 ccacactaactgcaaaggaaatgtctggacgagtgactgtgagataattcaa-ttttccaaccaatcttccatatcttcctgaatctgataaaggctccc 41489219  T
Q  606 ctttattaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttctt 705  Q
    ||| ||||||| ||||||||||||||||||||||  || ||||||| |||||| |||||||||||| ||||||||| | ||||| || ||||||||||      
T  41489220 cttgattaggtagaagtttgacatttggatccatcggagtatcaatcggcttggcattcaatagacctgtttcttcaagaatatccaaagcatatttc-c 41489318  T
Q  706 tttgtgaaattacaataccatccttggattgggctacctcaatacctaacaagtaacg 763  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  41489319 tttgtgaaattacaataccatccttggattgggctacatcaatacccaaaaagtaacg 41489376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 506 - 762
Target Start/End: Original strand, 29806682 - 29806937
Alignment:
Q  506 accacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaatatgatagaggctcc 605  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||| ||||||  |  |||||||| |||||| |||||||||||||    
T  29806682 accacactaactgcaaaggaaatgtctggacgagtgactctgagataattcaaattttc-aaccaatctcctatatcttcttgaatctgatagaggctcc 29806780  T
Q  606 -ctttattaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttct 704  Q
     | | ||||||| ||| ||||||||||||||||||  || |||||| ||| ||| ||||||||||||||||||||||   |||||||||||||||||||     
T  29806781 tcctgattaggtagaaatttgacatttggatccataggagtatcaactggtttggcattcaatagacatgtttcttcatgaatattcatagcatatttc- 29806879  T
Q  705 ttttgtgaaattacaataccatccttggattgggctacctcaatacctaacaagtaac 762  Q
     |||||||||| | |||||||||| |||||||||||||||| ||||| || |||||||    
T  29806880 ctttgtgaaatcataataccatccatggattgggctacctcgatacccaaaaagtaac 29806937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 126 - 388
Target Start/End: Original strand, 45433813 - 45434076
Alignment:
Q  126 gatttaaggcaatatgcaacgcagcttgactatcacatataac-gtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaat 224  Q
    ||||| |||||||||||||| | |||||| | ||||||||||  ||| |||   ||||||| |  ||||||||||| || ||||| || |||||||||||    
T  45433813 gatttgaggcaatatgcaacacggcttgattgtcacatataagtgtcattggtcgtgcttcttcaaattgaagttctttgagtaattgcttcaaccaaat 45433912  T
Q  225 gagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccg 324  Q
    ||| |||||||||||||||| ||| |||||||||||  |||| |||||||||| |||| ||||||| |||||||||| ||||||| ||| ||| |||||     
T  45433913 gagttcacatgttactagtgccatagccctatattctgcctcaacgcttgatcttgcaattacattctgtttcttactcttccaggataccaggtttccc 45434012  T
Q  325 ccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcat 388  Q
    ||||||||||||||||| ||| || ||||| |||||||||| | ||| | ||| ||||||||||    
T  45434013 ccaacaagtacacaatacccagaagtagatcgtctatcaataggtgagcctgcccaatcagcat 45434076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 127 - 366
Target Start/End: Original strand, 29806302 - 29806542
Alignment:
Q  127 atttaaggcaatatgcaacgcagcttgactatcacatataa-cgtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatg 225  Q
    |||| ||||||||||||| |  |||||| |||||||||||| | || |||   ||||||| |  |||||||||||||| |||||||| |||||| | |||    
T  29806302 atttgaggcaatatgcaatgaggcttgattatcacatataagcatcattggtcgtgcttcttcaaattgaagttccttgagtaactggttcaacaacatg 29806401  T
Q  226 agctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccgc 325  Q
    || ||||||||||||||||| ||||||||||||||  |||| |||||||||| | || ||| |||||||||||||| ||| ||| | ||||| ||||| |    
T  29806402 agttcacatgttactagtgttatggccctatattctgcctcaacgcttgatcttacaattatattttgtttcttactctttcaggacatcaggtttcctc 29806501  T
Q  326 caacaagtacacaatatccaaaaatagattgtctatcaatg 366  Q
     ||||| ||||||| | ||| |||| ||| |||||||||||    
T  29806502 taacaaatacacaacacccataaatggatcgtctatcaatg 29806542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 126 - 384
Target Start/End: Original strand, 16476724 - 16476983
Alignment:
Q  126 gatttaaggcaatatgcaacgcagcttgactatcacatataac-gtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaat 224  Q
    ||||| |||||||||||||| |  ||||| ||||||||||||  ||| |||   ||||||| | |||| |||||||||| |||||||  |||||||||||    
T  16476724 gattttaggcaatatgcaacacgacttgattatcacatataagtgtcattggtcgtgcttcttcgaatcgaagttccttgagtaactacttcaaccaaat 16476823  T
Q  225 gagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccg 324  Q
    ||| |||||||||||||| | ||||||||||||||   | ||  ||||||||| ||||  ||||||||||||||||| ||||||  ||||||| |||||     
T  16476824 gagttcacatgttactagggacatggccctatattatgcttcagcgcttgatcttgcaaatacattttgtttcttactcttccatgatatcaggtttcct 16476923  T
Q  325 ccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatca 384  Q
    |||| |||||| ||||| ||  || | ||| |||||||||||| ||||| ||| ||||||    
T  16476924 ccaaaaagtacgcaataccctgaagtggatcgtctatcaatgggtgaacctgcccaatca 16476983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 505 - 751
Target Start/End: Original strand, 16477120 - 16477364
Alignment:
Q  505 taccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaatatgatagaggct- 603  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||||||  |  ||||||||  || || ||||||||| |     
T  16477120 taccacactaactgcaaaggaaatgtatgaacgagtgattgtgagataatttaa-tcttccaaccaatctcctatatcttcctg-atctgatagaggatc 16477217  T
Q  604 ccctttattaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttc 703  Q
    ||| | ||||||| |||| |||||||||  ||||   ||| |||||||||||||| ||||||||  | |||||||||| | ||||| ||||  | |||||    
T  16477218 cccctgattaggtagaagattgacatttacatccgcatgagtatcaattggcttggcattcaatttatatgtttcttcaagaatatacatacaacatttc 16477317  T
Q  704 tttttgtgaaattacaataccatccttggattgggctacctcaatacc 751  Q
      ||||||||||||||||| |||| ||||||| | |||||||||||||    
T  16477318 -ctttgtgaaattacaatatcatctttggattagactacctcaatacc 16477364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 492 - 767
Target Start/End: Original strand, 45434197 - 45434471
Alignment:
Q  492 ttaaaaattggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaat 591  Q
    |||| |||||||||||||||||||| ||||| |||||||  |||||||||| ||| || ||||| |||||  ||||||||  |  |||| ||   |||||    
T  45434197 ttaagaattggcttaccacactaaccgcaaacgaaatgttcggacgagtgactgtaaggtaattcaatttc-ccaaccaatctcctatacctccctgaat 45434295  T
Q  592 atgatagaggctcccttt-attaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatatt 690  Q
      ||||  | |||||  | ||| ||| ||||||||||||| ||||||||  || |||||| ||||||| | ||||| |||||||||||||| | |||||     
T  45434296 cagataacgactccccatgattgggtagaagtttgacattaggatccataggagtatcaactggcttggcgttcaaaagacatgtttcttcaagaatatc 45434395  T
Q  691 catagcatatttctttttgtgaaattacaataccatccttggattgggctacctcaatacctaacaagtaacgaagt 767  Q
    |||||||||||| |  |||||| ||||| | ||||||||| |||||||||||||||||||| || || |||||||||    
T  45434396 catagcatattt-tcgttgtgatattactagaccatccttagattgggctacctcaatacccaaaaaataacgaagt 45434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 21265982 - 21266070
Alignment:
Q  25 gaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||| ||||||||  ||||||| |||||||||||||||    
T  21265982 gaagtttctcgcacataaaataaattgttgaacaactaggtgacaactcaagaaaatcatttaaaa--aaaatacatatataaaatattgg 21266070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 336981 - 336898
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  |||||||||||||||||||||||||||| |||| ||||||||| ||||| |   ||||||| ||||||||||||    
T  336981 aagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaaaattatttata---aaaatacatatataaaatat 336898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 9538424 - 9538475
Alignment:
Q  39 ataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaa 90  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  9538424 ataaaataaattgttgaccaactaagtgacaagtcaagaaaatcatttaaaa 9538475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 390
Target Start/End: Original strand, 22097074 - 22097273
Alignment:
Q  191 attgaagttccttaagtaactgtttcaaccaaatgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacatt 290  Q
    ||||||| | ||| ||||| || ||||||||||||||||||||| || |||||| ||||| | |||||||  ||||   ||| |||| ||||  ||||||    
T  22097074 attgaagcttcttgagtaaatgcttcaaccaaatgagctcacatatttctagtgccatgggcttatattctccctcagtgctagatcttgcaactacatt 22097173  T
Q  291 ttgtttcttacccttccagaatatcagatttccgccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcatct 390  Q
    ||| ||||||| |||   | ||||||| ||||| | |||| ||||| | || | |||||| ||||| |||||||||||| ||| || ||| |||||||||    
T  22097174 ttgcttcttactctttttggatatcaggtttcctctaacatgtacatattacctaaaaatggattgcctatcaatggattaacctgttcagtcagcatct 22097273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 6834933 - 6834845
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    |||||||||||  ||||||||||||  |||||||| || || ||||| |||||||| ||||||||| ||||||| |||||||||||||||    
T  6834933 aagtttctcgcacataaaataaattaatgaacaaccaaatggcaagtaaagaaaattatttaaaaa-aaaatacatatataaaatattgg 6834845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 29387810 - 29387749
Alignment:
Q  29 tttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaa 90  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||| ||||| | ||||||||    
T  29387810 tttctcgcacataaaataaattgttgaccaactaagtgacaagtcgagaaagtcatttaaaa 29387749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 36075344 - 36075277
Alignment:
Q  44 ataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    |||||||||||| |||||||||||||| | |||||||| |||| |    ||||||| |||||||||||||||    
T  36075344 ataaattgttgagcaactaagtgacaatttaagaaaatcatttta----aaaatacatatataaaatattgg 36075277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 571
Target Start/End: Original strand, 32938508 - 32938588
Alignment:
Q  490 aattaaaaattggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaa 571  Q
    ||||||||| ||||||||||||||||||  |||| |||| | |||| |||||| | ||||||| || || ||||||||||||    
T  32938508 aattaaaaaatggcttaccacactaactataaagaaaatatttggaagagtgactatgagatagttcaa-ttttccaaccaa 32938588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 3e-78; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 180 - 767
Target Start/End: Complemental strand, 19127060 - 19126448
Alignment:
Q  180 tgcttccttgaattgaagttccttaagtaactgtttcaaccaaatgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcct 279  Q
    |||||| | |||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||  | || | |||||||| |    
T  19127060 tgcttcttcgaattgaagttctttgagtaaatgcttcaaccaaatgagttcacatgttactagtgtcatgaccctatattctgcatcaaagcttgatctt 19126961  T
Q  280 gcagttacattttgtttcttacccttccagaatatcagatttccgccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctc 379  Q
    |||  ||||||||||||||||| |||||| |||| ||| ||||| | ||||||||||||||| ||| || | ||| || |||||||||  |||| |||      
T  19126960 gcaactacattttgtttcttactcttccaaaataacaggtttcctcaaacaagtacacaatacccataagtggatcgtttatcaatgggcgaacctgcct 19126861  T
Q  380 aatcagcatctaagta-----------------tgttatttatcctcataaatgtggcnnnnnnnnggagcaccttcgatgtatttaaaaatctgaatta 462  Q
    | |||| |||| ||||                 |||  |||||||||||||||| | |        |||||||||| ||||||||||| |||  ||||||    
T  19126860 agtcaggatctgagtaaccaacctatctgagtatgtcctttatcctcataaatgagacattttcctggagcacctttgatgtatttaagaattcgaatta 19126761  T
Q  463 aagtatttgtattttcttgacatggagaa-ttaaaaattggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaattt 561  Q
    ||| |||  | | ||||||  | |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||    
T  19126760 aagcattcatgtgttcttggaaaggagaaattaagaattggcttactacactaactgcaaaggaaatgtctggacgagtgactgtgagataattcaa-tt 19126662  T
Q  562 ttccaaccaaattattatatcttattgaatatgatagaggct-ccctttattaggttgaagtttgacatttggatccat-gt-------gaatatcaatt 652  Q
    ||||||||||  |  ||||||||  ||||||| | ||||||| ||| | ||||||| ||| |||||||||||||||||| ||       || ||||||||    
T  19126661 ttccaaccaatctcctatatcttcctgaatattacagaggctccccctgattaggtagaaatttgacatttggatccatagtaccataggagtatcaatt 19126562  T
Q  653 ggcttgacattcaatagacatgtttcttctataatattcatagcatatttctttttgtgaaattacaataccatccttggattgggctacctcaatacct 752  Q
    |||||| |||||||||||||||||||||| | |||||||||||||||||||   |||||||||||||| ||||||||||||||| |||| |||||||||     
T  19126561 ggcttggcattcaatagacatgtttcttcaagaatattcatagcatatttc-ccttgtgaaattacaacaccatccttggattgagctatctcaataccc 19126463  T
Q  753 aacaagtaacgaagt 767  Q
    || ||||||| ||||    
T  19126462 aaaaagtaactaagt 19126448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 127 - 389
Target Start/End: Original strand, 14156732 - 14156995
Alignment:
Q  127 atttaaggcaatatgcaacgcagcttgactatcacatataac-gtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatg 225  Q
    |||| |||||||||||||||| |||||| | ||||||||||  ||| |||   || |||| |  ||||||||||| || |||||||| ||||||||||||    
T  14156732 atttgaggcaatatgcaacgcggcttgattgtcacatataagagtcattggtcgtacttcttcaaattgaagttctttgagtaactgcttcaaccaaatg 14156831  T
Q  226 agctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccgc 325  Q
    || |||||||||||||||| ||| |||||||||||  ||||  ||||||||| ||||  ||||||||||||||||| ||||||| ||| ||| ||||| |    
T  14156832 agttcacatgttactagtgccatagccctatattctgcctcagcgcttgatcttgcaactacattttgtttcttactcttccaggataccaggtttcccc 14156931  T
Q  326 caacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcatc 389  Q
    |||||||||||||||| | | || ||||| |||||||||| | ||| | ||| |||||||||||    
T  14156932 caacaagtacacaatacctagaagtagatcgtctatcaataggtgagcctgcccaatcagcatc 14156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 41947387 - 41947488
Alignment:
Q  23 gtgaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattggagcgtta 122  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  41947387 gtgaagtttctcacttataaaataaattgttgaacaactaagtgacaagtcaagaaaataattttaaaaaaaaatacgtatataaaatattggagcgtta 41947486  T
Q  123 ca 124  Q
    ||    
T  41947487 ca 41947488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 476 - 767
Target Start/End: Original strand, 14165985 - 14166276
Alignment:
Q  476 ttcttgacatggagaattaaa-aattggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaatt 574  Q
    |||||| || |||||||| || |||||||||||||||||||||||||| ||||| || |||||||||| ||| || ||||| |||||  |||||||   |    
T  14165985 ttcttggcaaggagaatttaagaattggcttaccacactaactgcaaacgaaatttccggacgagtgactgtaaggtaattcaatttc-ccaaccactct 14166083  T
Q  575 attatatcttattgaatatgatagaggctcccttt-attaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacat 673  Q
      |||| ||   |||||  ||||  |||||||  | ||| ||| ||||||||||||| ||| | ||  || |||||| ||||||| | ||||| |||| |    
T  14166084 cctatacctccctgaatcagataacggctccccctgattgggtagaagtttgacattaggaacaataggagtatcaactggcttggcgttcaaaagacct 14166183  T
Q  674 gtttcttctataatattcatagcatatttctttttgtgaaattacaataccatccttggattgggctacctcaatacctaacaagtaacgaagt 767  Q
    |||||||| | ||||| |||||||||||| |  |||||| ||||| | ||||||||| |||||||||||||||||||| || || |||||||||    
T  14166184 gtttcttcaagaatatccatagcatattt-tcgttgtgatattactagaccatccttagattgggctacctcaatacccaaaaaataacgaagt 14166276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 389
Target Start/End: Original strand, 8280620 - 8280817
Alignment:
Q  190 aattgaagttccttaagtaactgtttcaaccaaatgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacat 289  Q
    |||||||||||||  ||||| || |||||||||||||||||||| |||| ||||| |||| ||||||||||  |||| |||||||||| ||||  |  |     
T  8280620 aattgaagttcctcgagtaaatgcttcaaccaaatgagctcacaagttattagtgccatgaccctatattctgcctcaacgcttgatcttgcaact--ag 8280717  T
Q  290 tttgtttcttacccttccagaatatcagatttccgccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcatc 389  Q
    ||| |||||| | ||||||  ||||||  ||||| |||||||||||| |||| |||  | | |||   ||||||||| |||||| ||| |||||||||||    
T  8280718 tttttttcttgctcttccaagatatcaagtttcctccaacaagtacataatacccattattggatcacctatcaatgaatgaacctgcccaatcagcatc 8280817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 8362749 - 8362680
Alignment:
Q  23 gtgaagtttctcgcttataaa-ataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaa 91  Q
    ||||| ||||||||  ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  8362749 gtgaaatttctcgcacataaatataaactgttgaacaactaagtgacaagtcaagaaaatcatttaaaaa 8362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 49496980 - 49496928
Alignment:
Q  29 tttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaat 81  Q
    ||||||||  ||||||||||||||||| ||||||| |||||||||||||||||    
T  49496980 tttctcgcacataaaataaattgttgaccaactaaatgacaagtcaagaaaat 49496928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 10345717 - 10345754
Alignment:
Q  23 gtgaagtttctcgcttataaaataaattgttgaacaac 60  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  10345717 gtgaagtttctcgcttagaaaataaattgttgaacaac 10345754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 12719893 - 12720004
Alignment:
Q  129 ttaaggcaatatgcaacgcagcttgactatcacatataac-gtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatgag 227  Q
    ||||||||||||||||||   ||||||||||||||| ||  | | ||   |||||||| |  |||||||||||  | |||| ||| ||||||||||||||    
T  12719893 ttaaggcaatatgcaacgtgccttgactatcacatacaaatgacattatttgtgcttcttctaattgaagttctctgagtagctgattcaaccaaatgag 12719992  T
Q  228 ctcacatgttac 239  Q
    ||||||||||||    
T  12719993 ctcacatgttac 12720004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 7e-76; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 127 - 681
Target Start/End: Complemental strand, 55256141 - 55255570
Alignment:
Q  127 atttaaggcaatatgcaacgcagcttgactatcacatataa-cgtcgttgaatgtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatg 225  Q
    |||| |||| ||||||| |||||||||| |||||||||||| |||| |||   ||||||| | |||||||||||||||||||| ||| ||||||||||||    
T  55256141 attttaggcgatatgca-cgcagcttgattatcacatataagcgtcattggtcgtgcttcttcgaattgaagttccttaagtagctgcttcaaccaaatg 55256043  T
Q  226 agctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcagatttccgc 325  Q
    || |||||||||||||||| |||||||||||||||  ||||  ||||||||| ||||  ||||||||||||||||| ||||||| || |||| ||||| |    
T  55256042 agttcacatgttactagtgccatggccctatattctgcctcagcgcttgatcttgcaactacattttgtttcttactcttccaggatgtcaggtttcctc 55255943  T
Q  326 caacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagc----------------atctaagtatgttatttatcctc 409  Q
    |||||||||||||||| ||| || | |||  ||||||||||| ||||| ||| ||||||||                |||| |||||||  |||||||||    
T  55255942 caacaagtacacaatacccagaagtggatcatctatcaatgggtgaacgtgcccaatcagcatctgagtaaccaactatctgagtatgtcctttatcctc 55255843  T
Q  410 ataaatgtggcnnnnnnnnggagcaccttcgatgtatttaaaaatctgaattaaagtatttgtattttcttgacatggagaa-ttaaaaattggcttacc 508  Q
    ||||||| | |        |||||||||| ||||||||||| |||  ||||||||| |||  | | |||||| ||  ||||| |||| ||||||||||||    
T  55255842 ataaatgagaccttttcccggagcacctttgatgtatttaagaattcgaattaaagcattcatgtgttcttggcaaagagaatttaagaattggcttacc 55255743  T
Q  509 acactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatcttattgaatatgatagaggct-ccct 607  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||| || ||||||||||||  |  ||||||||  | ||| ||||| ||||| |||     
T  55255742 acactaactacaaaggaaatgtttggacgagtgactgtgagataattcaa-ttttccaaccaatctcctatatcttcctaaatctgataaaggctccccc 55255644  T
Q  608 ttattaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttc 681  Q
    | || ||||  ||||||||||||| |||||||  || |||||| ||||||| ||||||||| || |||||||||    
T  55255643 tgataaggtacaagtttgacatttagatccataggagtatcaactggcttggcattcaatatacctgtttcttc 55255570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 476 - 763
Target Start/End: Original strand, 14166878 - 14167164
Alignment:
Q  476 ttcttgacatggagaattaaa-aattggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaatt 574  Q
    |||||| || |||||||| || ||||||||||||| ||||||  |||||||||||||||||| ||||| | |||||||||| |||||| |||| |||  |    
T  14166878 ttcttggcaaggagaatttaagaattggcttaccatactaacctcaaaggaaatgtctggacaagtgactatgagataattcaatttt-ccaatcaatct 14166976  T
Q  575 attatatcttattgaatatgatagaggctccct-ttattaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacat 673  Q
     |||||||||  ||||| ||||||||||||||  ||||||||| ||  ||| ||||||||||||||  || |||||| ||||||| ||||||||| ||||    
T  14166977 cttatatcttcctgaatctgatagaggctcccccttattaggtagat-tttaacatttggatccataggagtatcaactggcttggcattcaatatacat 14167075  T
Q  674 gtttcttctataatattcatagcatatttctttttgtgaaattacaataccatccttggattgggctacctcaatacctaacaagtaacg 763  Q
    |||||||| | ||||| |||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||| | || ||||||||    
T  14167076 gtttcttcaagaatatccatagcatatttc-ctttgtgaaattacaataccatccatggattgggttacctcaatatccaaaaagtaacg 14167164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 15997423 - 15997521
Alignment:
Q  23 gtgaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattggagcgtta 122  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||| | ||||||    
T  15997423 gtgaaatttctcacttataaaataaattgcttaacaactaagtgacaagtcaag-aaataatttaaaa--aaaatacgtatataaaatattagggcgtta 15997519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 16974335 - 16974248
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    |||||| ||||  |||||||||||||||||||||||||||| ||||||||||| || ||||||||  ||||||| |||||||||||||||    
T  16974335 aagtttatcgcacataaaataaattgttgaacaactaagtggcaagtcaagaagattatttaaaa--aaaatacatatataaaatattgg 16974248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 46405626 - 46405709
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  |||||||||||||||||||||||||||| |||| ||||||||| ||||| |   ||||||| ||||||||||||    
T  46405626 aagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaaaattatttata---aaaatacatatataaaatat 46405709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 5025647 - 5025728
Alignment:
Q  28 gtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||  |||| ||||||||||||||||||||||| |||| |||| |||| ||||| |   ||||||| ||||||||||||    
T  5025647 gtttctcgcacataatataaattgttgaacaactaagtggcaagccaagtaaattatttata---aaaatacatatataaaatat 5025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 16474064 - 16473999
Alignment:
Q  44 ataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||| |   ||||||| ||||||||||||    
T  16474064 ataaattgttgaacaactaagtggcaagccaagaaaattatttata---aaaatacatatataaaatat 16473999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 6e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 387 - 766
Target Start/End: Original strand, 20187227 - 20187605
Alignment:
Q  387 atctaagtatgttatttatcctcataaatgtggcnnnnnnnnggagcaccttcgatgtatttaaaaatctgaattaaagtatttgtattttcttgacatg 486  Q
    |||| |||||||  |||||||||||||||| |||        |||||| | | ||||||||| ||||||  |||||||| |||  | | |||||| || |    
T  20187227 atctgagtatgtcttttatcctcataaatgaggcatttccatggagcatcgttgatgtattttaaaatcataattaaagcattcatgtgttcttggcagg 20187326  T
Q  487 gagaattaaa-aattggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatttaatttttccaaccaaattattatatctta 585  Q
    ||||||| || |||||| |||||||||||||||||||| |||||| |||||||| ||| ||||||||||| |||||| ||||||||  |  ||||||||     
T  20187327 gagaatttaagaattggtttaccacactaactgcaaagaaaatgtttggacgagcgat-gtgagataattcaatttt-ccaaccaatctcatatatcttc 20187424  T
Q  586 ttgaatatgatagaggctcccttta-ttaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctat 684  Q
      |||  ||||||||||||||  || |||||| || ||||||||||||||| ||| ||| ||||||||| |||  ||||||||||||||||| |||| |     
T  20187425 ccgaacctgatagaggctccccctaattaggtagacgtttgacatttggattcatatgagtatcaattgacttagcattcaatagacatgttacttcaag 20187524  T
Q  685 aatattcatagcatatttctttttgtgaaattacaataccatccttggattgggctacctcaatacctaacaagtaacgaag 766  Q
    ||||  ||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  20187525 aataaccatagcatatttccttt-gtgaacttacaatatcatccttggattgggctacctcaatacctagaaagtaacgaag 20187605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 20187037 - 20187161
Alignment:
Q  217 aaccaaatgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatca 316  Q
    |||||| |||||||||||||||| |||| ||| ||||||||||   | | | ||||||||| ||||  ||||||||||||||||| |||| | |||||||    
T  20187037 aaccaattgagctcacatgttaccagtgacatagccctatattatccatttgcgcttgatcttgcaactacattttgtttcttacacttctacaatatca 20187136  T
Q  317 gatttccgccaacaagtacacaata 341  Q
    ||||||| |||||||||| ||||||    
T  20187137 gatttcctccaacaagtagacaata 20187161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 10290430 - 10290518
Alignment:
Q  25 gaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| |||||||||| ||||||||  |||| || |||||||||||||||    
T  10290430 gaagtttctcgcacataaaataaattgttgaacaactaggtgacaactcaagaaaatcatttaaaa--aaaaaacatatataaaatattgg 10290518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 48655602 - 48655666
Alignment:
Q  24 tgaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaa 88  Q
    |||| ||||||||  ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  48655602 tgaaatttctcgcacataaaataaattgttgaacaactaagttacaagtcaagaaaatcatttaa 48655666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 751
Target Start/End: Complemental strand, 6739172 - 6739032
Alignment:
Q  609 tattaggttgaagtttgacatttggatccatgtgaatatcaattggcttgacattcaatagacatgtttcttctataatattcatagcatatttcttttt 708  Q
    |||||||| ||| ||||||||||||||  ||  || |||||| ||  |||||||| ||||||||||||||||| | |||||  ||| ||||||||||| |    
T  6739172 tattaggtagaattttgacatttggatttataagagtatcaactgt-ttgacattaaatagacatgtttcttcaagaatatctataacatatttctttct 6739074  T
Q  709 gtgaaattacaataccatccttggattgggctacctcaatacc 751  Q
     | | |||| || |||||| |||||||||| ||||||||||||    
T  6739073 -tcatattagaagaccatcattggattgggttacctcaatacc 6739032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 12197450 - 12197549
Alignment:
Q  23 gtgaagtttctcgcttataaaataaattgttgaacaacta---agtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattggagcg 119  Q
    |||||||||||||| |||||||||||||||||||||||||   ||||||||||||| || || |||     | |||| || ||||||||||||||| |||    
T  12197450 gtgaagtttctcgcatataaaataaattgttgaacaactaattagtgacaagtcaaaaatatcatt-----aaaaaaaacatatataaaatattggggcg 12197544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 9741608 - 9741539
Alignment:
Q  23 gtgaagtttctcgcttataaa-ataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaa 91  Q
    ||||| ||||||||  ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  9741608 gtgaaatttctcgcacataaatataaactgttgaacaactaagtgacaagtcaaaaaaatcatttaaaaa 9741539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 15875069 - 15875153
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  ||||||||||||  |||||||  || || |||||||||||||| |||| |||  ||||||| ||||||||||||    
T  15875069 aagtttctcgcacataaaataaattaatgaacaatcaaatggcaagtcaagaaaattattttaaa--aaaatacatatataaaatat 15875153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 6739591 - 6739558
Alignment:
Q  206 gtaactgtttcaaccaaatgagctcacatgttac 239  Q
    |||||| |||||||||||||||||||||||||||    
T  6739591 gtaactatttcaaccaaatgagctcacatgttac 6739558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1532 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold1532
Description:

Target: scaffold1532; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 218 - 555
Target Start/End: Original strand, 1 - 354
Alignment:
Q  218 accaaatgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcctgcagttacattttgtttcttacccttccagaatatcag 317  Q
    |||||||||| |||||||||||||||| |||| | ||||||||  || |  ||||||||| ||||  ||||||||||||||||| |||| || |||||||    
T  1 accaaatgagttcacatgttactagtgccatgactctatattctgccacagcgcttgatcttgcaactacattttgtttcttactcttctaggatatcag 100  T
Q  318 atttccgccaacaagtacacaatatccaaaaatagattgtctatcaatggatgaacttgctcaatcagcatctaagta----------------tgttat 401  Q
     | |||  |||||||||||||||| ||| |  | ||| |||||||||||  ||||| ||  || ||||||||||||||                |||  |    
T  101 gtctccttcaacaagtacacaata-ccagatgtggatcgtctatcaatgagtgaacctgtccagtcagcatctaagtaatcaactatatgagtatgtcct 199  T
Q  402 ttatcctcataaatgtggcnnnnnnnnggagcaccttcgatgtatttaaaaatctgaattaaagtatttgtattttcttgacatggagaattaaa-aatt 500  Q
    ||||| ||||||||| | |        |||||||||| |||||| |||| |||   |||||||| |||| | | |||||| || |||||||| || ||||    
T  200 ttatcgtcataaatgagaccttttcatggagcacctttgatgtacttaagaattcaaattaaagcatttatgtgttcttggcaaggagaatttaagaatt 299  T
Q  501 ggcttaccacactaactgcaaaggaaatgtctggacgagtgattgtgagataatt 555  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  300 ggcttaccacactaactacaaaggaaatgtctggacgagtgattgtgagataatt 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 1180 - 1307
Alignment:
Q  179 gtgcttccttgaattgaagttccttaagtaactgtttcaaccaaatgagctcacatgttactagtgtcatggccctatattcgacctctacgcttgatcc 278  Q
    ||||||| | ||||||||||||||| ||||| || ||| |||||||||| |||||||||||||||| |||| | ||||||||  || |  |||||||||     
T  1180 gtgcttcttcgaattgaagttccttgagtaaatgcttctaccaaatgagttcacatgttactagtgccatgactctatattctgccacagcgcttgatct 1279  T
Q  279 tgcagttacattttgtttcttacccttc 306  Q
    ||||  ||||||||||||||||| ||||    
T  1280 tgcaactacattttgtttcttactcttc 1307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 5163 - 5080
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  |||||||||||||||||||||||||||| |||| ||||||||| ||||| |   ||||||| ||||||||||||    
T  5163 aagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaaaattatttata---aaaatacatatataaaatat 5080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 40446357 - 40446274
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  |||||||||||||||||||||||||||| |||| ||||||||| ||||| |   ||||||| ||||||||||||    
T  40446357 aagtttctcgcacataaaataaattgttgaacaactaagtggcaagccaagaaaattatttata---aaaatacatatataaaatat 40446274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 16132339 - 16132433
Alignment:
Q  25 gaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattggagcgttaca 124  Q
    ||||||||||||  ||||||||||||||||||||| || ||||||| |||||||||| |||||     ||||||| ||| ||||||||||| ||||||||    
T  16132339 gaagtttctcgcacataaaataaattgttgaacaattaggtgacaactcaagaaaatcattta-----aaaatacatatgtaaaatattggggcgttaca 16132433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 12775949 - 12776036
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    |||||||||||  |||||||||||||||||||| |||||||  |||||||||| || |||| |||  ||||||| |||||||||||||||    
T  12775949 aagtttctcgcacataaaataaattgttgaacagctaagtggaaagtcaagaagattattttaaa--aaaatacatatataaaatattgg 12776036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 32736617 - 32736699
Alignment:
Q  25 gaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaat 110  Q
    ||||||||||||  |||||||||||||||||||||||| ||| |||| ||||||||| ||||| |   ||||||| ||||||||||    
T  32736617 gaagtttctcgcacataaaataaattgttgaacaactaggtggcaagccaagaaaattatttata---aaaatacatatataaaat 32736699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 42859707 - 42859657
Alignment:
Q  23 gtgaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtc 73  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  42859707 gtgaagtttctcgcatataaattaaattgttgaacaactaagtgacaagtc 42859657  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 535857 - 535773
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  ||||||||||||  |||||||| || || |||||||||||||| |||| |||  ||||||| ||||||||||||    
T  535857 aagtttctcgcacataaaataaattaatgaacaaccaaatggcaagtcaagaaaattattttaaa--aaaatacatatataaaatat 535773  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 29614091 - 29614141
Alignment:
Q  209 actgtttcaaccaaatgagctcacatgttactagtgtcatggccctatatt 259  Q
    ||||||||||| ||||||||||||||||||||| ||  ||| |||||||||    
T  29614091 actgtttcaactaaatgagctcacatgttactaatgcaatgaccctatatt 29614141  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 40686347 - 40686280
Alignment:
Q  44 ataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    |||||||||||| ||||||||||| || | |||||||| ||||||    ||||||| |||||||||||||||    
T  40686347 ataaattgttgagcaactaagtgataatttaagaaaatcatttaa----aaaatacatatataaaatattgg 40686280  T

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Target: scaffold0413 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 7715 - 7659
Alignment:
Q  25 gaagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaat 81  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||    
T  7715 gaagtttctcgcacataaaataaattgttgaacaactaggtgacaactcaagaaaat 7659  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 10752832 - 10752907
Alignment:
Q  39 ataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatattgg 115  Q
    |||||| |||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| ||| |||||||||||||||    
T  10752832 ataaaacaaattgctgaacaaccaagtggcaagtcaagaaaattatttataaa-aaagtacatatataaaatattgg 10752907  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 34635313 - 34635229
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  ||||||||||||  |||||||| || || |||||||||||||| |||| |||  ||||||| ||||||||||||    
T  34635313 aagtttctcgcacataaaataaattaatgaacaaccaaatggcaagtcaagaaaattattttaaa--aaaatacatatataaaatat 34635229  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 25003930 - 25003865
Alignment:
Q  44 ataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||| |   ||||||| ||||||||||||    
T  25003930 ataaattgttgaacaactaagtggcaagccaagaaaattatttata---aaaatacatatataaaatat 25003865  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 854
Target Start/End: Complemental strand, 17393320 - 17393245
Alignment:
Q  779 tactcgtattcctattcttgatgaaccttggctaaataatggtgagcgtattgacggcaatattccaggagctcat 854  Q
    |||| |||||||||| ||||||||||||| | |  ||||||||||| ||||||||   |||||| |||||||||||    
T  17393320 tacttgtattcctatccttgatgaaccttcgttgcataatggtgagtgtattgacaataatatttcaggagctcat 17393245  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 854
Target Start/End: Original strand, 42879 - 42968
Alignment:
Q  765 agtattggttttggtactcgtattcctattcttgatgaaccttggctaaataatggtgagcgtattgacggcaatattccaggagctcat 854  Q
    |||||||| | ||||||| |||||||||| ||||||||||||||| |  ||| | ||||||||||||||   |||| |||| ||||||||    
T  42879 agtattgggtctggtacttgtattcctatccttgatgaaccttggttgcatactagtgagcgtattgacaataatactccatgagctcat 42968  T

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Target: scaffold0657 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 5460 - 5544
Alignment:
Q  26 aagtttctcgcttataaaataaattgttgaacaactaagtgacaagtcaagaaaataatttaaaaagaaaatacgtatataaaatat 112  Q
    |||||||||||  ||||||||||||  |||||||| || || |||||||||||||| ||||   || ||||||| ||||||||||||    
T  5460 aagtttctcgcacataaaataaattaatgaacaaccaaatggcaagtcaagaaaattattt--taataaaatacatatataaaatat 5544  T

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