View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10105_low_1 (Length: 608)
Name: NF10105_low_1
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10105_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 216 - 524
Target Start/End: Complemental strand, 22219338 - 22219030
Alignment:
| Q |
216 |
gcactatgatcactcgggttaattatgtaagctagatgagtagtttcgtgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatg |
315 |
Q |
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| T |
22219338 |
gcactatgatcacttgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatg |
22219239 |
T |
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| Q |
316 |
catgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggtttgctctcttgtttg |
415 |
Q |
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| T |
22219238 |
catgggccaaaacataccgagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggttagctctcttgtttg |
22219139 |
T |
|
| Q |
416 |
aaaacctcaagtgtgaagattggtaatattgaaaatggaacagaatccttaaggtcctctaatgaatgtgtttaattttgctatgatatgtctatcatta |
515 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22219138 |
aaaacctcaagtgtgaagattcgtaatattgaaaatggaacagaatccttaaggtcctctaatgaatatgtttaattttgctatgatatgtctatcatta |
22219039 |
T |
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| Q |
516 |
cctattagt |
524 |
Q |
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||||||||| |
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| T |
22219038 |
cctattagt |
22219030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 33103407 - 33103307
Alignment:
| Q |
214 |
atgcactat-gatcactcgggttaattatgtaagctagatgagtagtttcgtgagattggattagttaaacttttgtagtgaatgatccttatgtgatga |
312 |
Q |
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| T |
33103407 |
atgcactatcgatcacttggattaattatgtaagctagatgactaattt---gagattagattaattaaacttttgtagtgaatgatccttatgtgatga |
33103311 |
T |
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| Q |
313 |
atgc |
316 |
Q |
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|||| |
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| T |
33103310 |
atgc |
33103307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 33125895 - 33125804
Alignment:
| Q |
284 |
ttttgtagtgaatgatccttatgtgatgaatgcatgggccaaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagcca |
375 |
Q |
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||||||||| |||||||| | |||| ||||| |||||||||| |||| || ||| ||||||||||| ||||| |||||| || |||| |||| |
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| T |
33125895 |
ttttgtagtcaatgatccatttgtgctgaattcatgggccaagacattcccagagaacaagcatgtcaagttccttgctgatggttctgcca |
33125804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 44170203 - 44170174
Alignment:
| Q |
108 |
ttgcatgctaattgcctcgtaagttctcaa |
137 |
Q |
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| T |
44170203 |
ttgcatgctaattgcctcgtaagttctcaa |
44170174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 44177003 - 44176974
Alignment:
| Q |
108 |
ttgcatgctaattgcctcgtaagttctcaa |
137 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44177003 |
ttgcatgctaattgcctcgtaagttctcaa |
44176974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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