View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10105_low_11 (Length: 237)
Name: NF10105_low_11
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10105_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4359339 - 4359552
Alignment:
| Q |
1 |
aaagaaagggatgaattgaggaggaagggtaatgggtctatatatatat--------gggaaag--gggagaaagaaaaacgtggttttattatttagtg |
90 |
Q |
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| T |
4359339 |
aaagaaagggttgaattgaggaggaagggtaatgggtctatatatatatatatatatgggaaagaggggagaaagaaaaacgtggttttattatttagtg |
4359438 |
T |
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| Q |
91 |
cttgggtgggtgggtttgtgttgccttaagagttaagaggttgtagttgaatctcacgtgagattgtgtagtctaaatgaaaatgtcacgtgactttaaa |
190 |
Q |
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| T |
4359439 |
cttgggtgggtgggtttgtgttgccttaagagttaagaggttgtagttgaatctcacgtgagattgtgtagtttaaatgaaaatgtcacgtgactataaa |
4359538 |
T |
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| Q |
191 |
aaatcatggacgta |
204 |
Q |
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| T |
4359539 |
aaatcatggacgta |
4359552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4352912 - 4352866
Alignment:
| Q |
1 |
aaagaaagggatgaattgaggaggaagggtaatgggtctatatatat |
47 |
Q |
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| T |
4352912 |
aaagaaagggatgaattgaagaggaagggaaatgggtgtatatatat |
4352866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 4349507 - 4349463
Alignment:
| Q |
5 |
aaagggatgaattgaggaggaagggtaatgggtctatatatatat |
49 |
Q |
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| T |
4349507 |
aaagggatgaattgaagaggaagggtgatgggtatatatatatat |
4349463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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