View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10105_low_12 (Length: 236)

Name: NF10105_low_12
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10105_low_12
NF10105_low_12
[»] chr8 (17 HSPs)
chr8 (1-221)||(18112370-18112590)
chr8 (1-71)||(3445778-3445849)
chr8 (5-71)||(13585555-13585622)
chr8 (1-61)||(18420363-18420424)
chr8 (1-61)||(44664361-44664422)
chr8 (1-68)||(7858330-7858398)
chr8 (1-57)||(42951556-42951613)
chr8 (1-56)||(43926088-43926144)
chr8 (5-53)||(5869085-5869134)
chr8 (1-57)||(27074719-27074776)
chr8 (1-55)||(3471844-3471899)
chr8 (22-53)||(30915052-30915083)
chr8 (18-61)||(34523712-34523755)
chr8 (1-66)||(1004303-1004369)
chr8 (17-55)||(33453017-33453055)
chr8 (5-55)||(35875151-35875201)
chr8 (18-71)||(39697693-39697746)
[»] chr4 (13 HSPs)
chr4 (1-59)||(23256843-23256901)
chr4 (1-61)||(29221381-29221442)
chr4 (1-69)||(53011960-53012029)
chr4 (1-60)||(27632644-27632704)
chr4 (5-68)||(41038501-41038565)
chr4 (4-68)||(11681492-11681557)
chr4 (4-68)||(11689771-11689836)
chr4 (4-70)||(19661629-19661696)
chr4 (1-61)||(32130547-32130608)
chr4 (20-55)||(26328796-26328831)
chr4 (5-55)||(24449351-24449401)
chr4 (1-53)||(44478285-44478338)
chr4 (18-70)||(51066060-51066112)
[»] chr7 (17 HSPs)
chr7 (1-69)||(33910310-33910379)
chr7 (1-70)||(11672836-11672906)
chr7 (1-61)||(4100206-4100267)
chr7 (1-61)||(6379842-6379903)
chr7 (1-69)||(42160872-42160941)
chr7 (5-71)||(44875907-44875974)
chr7 (1-69)||(12251033-12251103)
chr7 (18-69)||(26282282-26282333)
chr7 (5-55)||(29730853-29730904)
chr7 (5-55)||(29742043-29742094)
chr7 (21-55)||(33418874-33418908)
chr7 (1-69)||(7636073-7636142)
chr7 (5-54)||(36438117-36438166)
chr7 (5-57)||(36796133-36796186)
chr7 (1-69)||(44893777-44893846)
chr7 (19-55)||(773644-773680)
chr7 (1-40)||(18015359-18015399)
[»] chr6 (15 HSPs)
chr6 (1-69)||(2618598-2618667)
chr6 (4-69)||(6361011-6361077)
chr6 (1-63)||(3514604-3514667)
chr6 (1-71)||(22503989-22504060)
chr6 (4-66)||(29401387-29401450)
chr6 (1-69)||(31258321-31258391)
chr6 (4-53)||(12614481-12614531)
chr6 (1-47)||(29149636-29149683)
chr6 (18-69)||(29308217-29308268)
chr6 (18-69)||(31861250-31861301)
chr6 (21-55)||(350682-350716)
chr6 (5-55)||(3748331-3748381)
chr6 (5-61)||(1092799-1092856)
chr6 (19-55)||(1690481-1690517)
chr6 (26-66)||(6754470-6754510)
[»] chr5 (16 HSPs)
chr5 (1-69)||(37047028-37047097)
chr5 (1-56)||(13656457-13656512)
chr5 (1-70)||(13474876-13474946)
chr5 (5-68)||(13424114-13424178)
chr5 (19-71)||(20976246-20976298)
chr5 (1-66)||(12661553-12661619)
chr5 (5-55)||(16515755-16515805)
chr5 (8-69)||(26377525-26377587)
chr5 (5-55)||(931618-931669)
chr5 (5-55)||(8379208-8379257)
chr5 (1-67)||(26312232-26312299)
chr5 (18-61)||(43511884-43511927)
chr5 (1-69)||(36718378-36718447)
chr5 (21-61)||(3349487-3349527)
chr5 (22-66)||(10591028-10591072)
chr5 (19-55)||(41612987-41613023)
[»] chr1 (22 HSPs)
chr1 (1-69)||(51109848-51109917)
chr1 (4-69)||(6150971-6151037)
chr1 (1-61)||(17487036-17487097)
chr1 (5-69)||(18127688-18127753)
chr1 (1-61)||(20905043-20905104)
chr1 (1-53)||(30004673-30004726)
chr1 (1-61)||(30899906-30899971)
chr1 (1-59)||(255-314)
chr1 (1-69)||(20470858-20470928)
chr1 (1-57)||(48722127-48722184)
chr1 (1-72)||(29207839-29207911)
chr1 (5-69)||(42740355-42740419)
chr1 (1-59)||(33124400-33124459)
chr1 (1-55)||(28885434-28885489)
chr1 (21-55)||(9777678-9777712)
chr1 (5-55)||(37873520-37873570)
chr1 (4-61)||(50552746-50552804)
chr1 (1-53)||(14084463-14084516)
chr1 (5-53)||(26486141-26486189)
chr1 (23-55)||(31369276-31369308)
chr1 (5-53)||(44836492-44836540)
chr1 (1-69)||(52055797-52055865)
[»] chr3 (18 HSPs)
chr3 (5-69)||(28132484-28132549)
chr3 (1-68)||(21784531-21784598)
chr3 (1-65)||(8364418-8364483)
chr3 (5-60)||(27729529-27729585)
chr3 (1-71)||(6715684-6715755)
chr3 (1-68)||(52654873-52654941)
chr3 (1-61)||(46791454-46791513)
chr3 (5-69)||(13401707-13401772)
chr3 (21-61)||(20762320-20762360)
chr3 (4-59)||(23164331-23164387)
chr3 (18-69)||(24252884-24252934)
chr3 (1-66)||(51939307-51939373)
chr3 (1-53)||(25598848-25598901)
chr3 (1-53)||(27110636-27110689)
chr3 (30-70)||(25525755-25525795)
chr3 (5-68)||(7767316-7767379)
chr3 (23-70)||(54430817-54430864)
chr3 (5-55)||(27303437-27303487)
[»] chr2 (24 HSPs)
chr2 (1-69)||(41096289-41096358)
chr2 (1-71)||(19367172-19367243)
chr2 (1-69)||(13020667-13020736)
chr2 (1-69)||(26151497-26151566)
chr2 (4-55)||(7993880-7993932)
chr2 (1-61)||(4856238-4856299)
chr2 (1-57)||(6530907-6530964)
chr2 (1-69)||(45619221-45619290)
chr2 (1-66)||(36481640-36481706)
chr2 (1-69)||(2064050-2064119)
chr2 (1-61)||(18676067-18676128)
chr2 (1-69)||(25222570-25222639)
chr2 (1-57)||(34061627-34061684)
chr2 (1-69)||(45042636-45042705)
chr2 (18-69)||(17117395-17117446)
chr2 (5-68)||(39081645-39081708)
chr2 (1-56)||(42759518-42759574)
chr2 (18-69)||(1226017-1226068)
chr2 (4-61)||(42411314-42411370)
chr2 (21-71)||(15457768-15457818)
chr2 (5-70)||(18915798-18915864)
chr2 (21-67)||(21746983-21747029)
chr2 (1-61)||(12269671-12269732)
chr2 (5-68)||(18172694-18172757)
[»] scaffold0564 (1 HSPs)
scaffold0564 (1-71)||(1307-1378)
[»] scaffold0181 (1 HSPs)
scaffold0181 (1-56)||(16896-16952)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-61)||(16956-17017)
[»] scaffold0100 (1 HSPs)
scaffold0100 (5-56)||(45938-45990)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18112370 - 18112590
Alignment:
Q  1 tacgttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagggatggccctgatgaagatgctatagtagttaaaaagctggt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||    
T  18112370 tacgttttattttactaggacctattttaaaaagagagccgaacctcctatttcacatggatggccccgatgaagatgctataatagttaaaaagctggt 18112469  T
Q  101 gatatatgcttgctgggctcatcttttgtcacatagggatatttgagaggccgattgtgattattttcgctctaacacaagaagcaataggtgagctact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18112470 gatatatgcttgctgggctcatcttttgtcacatagggatatttgagaggccgattgtgattattttcgctctaacacaagaagcaagaggtgagctact 18112569  T
Q  201 ataagaagtgccatagataga 221  Q
    |||||||||||||||||||||    
T  18112570 ataagaagtgccatagataga 18112590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3445778 - 3445849
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    |||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| || ||||||    
T  3445778 tacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacagggacggtcctgat 3445849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 13585555 - 13585622
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  13585555 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacagggacggccctgat 13585622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18420424 - 18420363
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||    
T  18420424 tacgttttattttactaggagactattttaaaaagagagccgagcctcctatttcacaggga 18420363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44664422 - 44664361
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||    
T  44664422 tacgttttattttactagggacctattttaaaaagagagccgagccacctatttcacaggga 44664361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7858330 - 7858398
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||| |||| ||||||    
T  7858330 tacgttttattttactaggggcctattttaaaaagagagtcgagcctcctattccacggggacggccct 7858398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42951613 - 42951556
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcaca 57  Q
    ||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||    
T  42951613 tacgttttattttactagtaacctattttaaaaagagagccgagcctcctatttcaca 42951556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43926144 - 43926088
Alignment:
Q  1 tacgttttattttactag-ggcctattttaaaaagagagccgaacctcctatttcac 56  Q
    |||||||||||||||||  |||||||||||||||||||||||| | |||||||||||    
T  43926144 tacgttttattttactaaaggcctattttaaaaagagagccgagcttcctatttcac 43926088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 5869134 - 5869085
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctattt 53  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  5869134 ttttattttactagggacctattttaaaaagaaagccggacctcctattt 5869085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27074719 - 27074776
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcaca 57  Q
    ||||||||||||||||| || ||||||||||||||| |||||| |||| |||||||||    
T  27074719 tacgttttattttactatggacctattttaaaaagatagccgagcctcatatttcaca 27074776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3471844 - 3471899
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||| ||||||| | || |||||||||||||||||||| ||||||||||||    
T  3471844 tacgttttactttactaagagcttattttaaaaagagagccgagcctcctatttca 3471899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 30915083 - 30915052
Alignment:
Q  22 ctattttaaaaagagagccgaacctcctattt 53  Q
    ||||||||||||||||||||||||||||||||    
T  30915083 ctattttaaaaagagagccgaacctcctattt 30915052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 34523755 - 34523712
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||| |||||||||| |||||||||||| |||||    
T  34523755 gggcctattttaaatagagagccgagcctcctatttcataggga 34523712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1004303 - 1004369
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    ||||||||||||||||| ||  |||||||||||| |||| ||| ||||||||||||| |||| ||||    
T  1004303 tacgttttattttactatggatctattttaaaaaaagagtcgagcctcctatttcacggggacggcc 1004369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 33453017 - 33453055
Alignment:
Q  17 agggcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  33453017 agggcctattttaaaaagagaactgaacctcctatttca 33453055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 35875151 - 35875201
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| | | |||||||||||| ||| |||||||||||||||||    
T  35875151 ttttattttactcgagtctattttaaaaatagaaccgaacctcctatttca 35875201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 39697746 - 39697693
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    |||||||||||||| ||||| || | |||||||||||| ||||| |||||||||    
T  39697746 gggcctattttaaatagagacccaagcctcctatttcatagggacggccctgat 39697693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23256843 - 23256901
Alignment:
Q  1 tacgttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagg 59  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23256843 tacgttttattttactagggcctattttaaaaagagagccgagcctcctatttcacagg 23256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29221442 - 29221381
Alignment:
Q  1 tacgttttattttactag-ggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  29221442 tacgttttattttactagaggcctattttaaaaagagagccgagcctcctatttcacaggga 29221381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 53011960 - 53012029
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  53011960 tacgttttattttactatgagcctattttaaaaagagagccgagcctcctatttcacaggaacggccctg 53012029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27632644 - 27632704
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggg 60  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  27632644 tacgttttattttactaggggcctattttaaaatgagagccgagcctcctatttcacaggg 27632704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 41038501 - 41038565
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  41038501 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcaccgggacggccct 41038565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 11681557 - 11681492
Alignment:
Q  4 gttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||| ||||||    
T  11681557 gttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacggccct 11681492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 11689836 - 11689771
Alignment:
Q  4 gttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||| ||||||    
T  11689836 gttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacggccct 11689771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 19661629 - 19661696
Alignment:
Q  4 gttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    |||||||||||||||| |||||||||||||||||||| || |||||||||||||  ||| ||||||||    
T  19661629 gttttattttactaggagcctattttaaaaagagagcagagcctcctatttcactaggacggccctga 19661696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32130608 - 32130547
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    ||||||||||||||||| || ||||||||||||  |||||||| ||||||||||||||||||    
T  32130608 tacgttttattttactaaggacctattttaaaagaagagccgagcctcctatttcacaggga 32130547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 26328831 - 26328796
Alignment:
Q  20 gcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||||||||||||| ||||||||||||||||    
T  26328831 gcctattttaaaaagagagtcgaacctcctatttca 26328796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 24449351 - 24449401
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| | | |||||||||||| ||| |||||||||||||||||    
T  24449351 ttttattttactcgagtctattttaaaaatagaaccgaacctcctatttca 24449401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44478285 - 44478338
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctattt 53  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||    
T  44478285 tacgttttattttactaaagatctattttaaaaagagagtcgaacctcctattt 44478338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 51066112 - 51066060
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    |||||||||||||| ||||| |||| |||||||||||| ||||| | ||||||    
T  51066112 gggcctattttaaatagagaaccgagcctcctatttcatagggacgtccctga 51066060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33910310 - 33910379
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  33910310 tacgttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 33910379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11672836 - 11672906
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  11672836 tacgttttattttactaggggtctattttaaaaagagaaccgaacctccaatttcacggggatggccctga 11672906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4100206 - 4100267
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||    
T  4100206 tacgttttattttactagagatctattttaaaaagagagccgaacctcctatttcataggga 4100267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6379903 - 6379842
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||| |||||||||||||    
T  6379903 tacgttttattttactatgggcctattttaaaaagtgagccgagcctcatatttcacaggga 6379842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42160941 - 42160872
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| ||  ||||||||||||||||||  |||||||||||||||||||| |||||||    
T  42160941 tacgttttattttactaaggatctattttaaaaagagagcataacctcctatttcacagggacggccctg 42160872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 44875974 - 44875907
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    |||||||||| ||||| |||||||||||||||||| ||| |||||||||||| ||||| |||||||||    
T  44875974 ttttattttagtagggacctattttaaaaagagagtcgagcctcctatttcatagggacggccctgat 44875907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12251103 - 12251033
Alignment:
Q  1 tacgttttattttactag-ggcctattttaaaaa-gagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||| ||||||||||||||| || || ||| |||||||||||||||||| |||||||    
T  12251103 tacgttttattttactagaggcctattttaaaaaagatagtcgagcctcctatttcacagggacggccctg 12251033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 26282333 - 26282282
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||| || ||||||| |||||||||||| ||||| |||||||    
T  26282333 gggcctattttaaatagtgagccgagcctcctatttcatagggacggccctg 26282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 29730904 - 29730853
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| ||| |||||||||||||||||| ||| ||||||||||||    
T  29730904 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttca 29730853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 29742043 - 29742094
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| ||| |||||||||||||||||| ||| ||||||||||||    
T  29742043 ttttattttactgggggcctattttaaaaagagagtcgagcctcctatttca 29742094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 33418908 - 33418874
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||||||| ||||||||||||||    
T  33418908 cctattttaaaaagagagcctaacctcctatttca 33418874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7636142 - 7636073
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||| |||||||| |||||||||||||||||| |||  || |||||| ||| ||| |||||||    
T  7636142 tacgttttattctactaggggcctattttaaaaagagagacgagtcttctattttacatggacggccctg 7636073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 36438166 - 36438117
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttc 54  Q
    ||||||||||||  ||||||||||||||| ||| |||| |||||||||||    
T  36438166 ttttattttactgaggcctattttaaaaatagaaccgagcctcctatttc 36438117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 36796186 - 36796133
Alignment:
Q  5 ttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcaca 57  Q
    ||||||||||||||||  |||||||||||||||||| ||  |||||||||||||    
T  36796186 ttttattttactagggatctattttaaaaagagagctgagtctcctatttcaca 36796133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44893846 - 44893777
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||| || ||  ||||||||||||||||| ||| ||||||||||||| | || |||||||    
T  44893846 tacgttttattttattaaggatctattttaaaaagagagtcgagcctcctatttcacggagacggccctg 44893777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 773680 - 773644
Alignment:
Q  19 ggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||||||| |||||||||| |||||    
T  773680 ggcctattttaaaaagagagtcgaacctcctgtttca 773644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18015399 - 18015359
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagcc 40  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  18015399 tacgttttattttattaggggcctattttaaaaagagagcc 18015359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2618598 - 2618667
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  2618598 tacgttttattttactaggggcctattttaaaaagagagccgaacctcctatttcacatggacggccctg 2618667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6361011 - 6361077
Alignment:
Q  4 gttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  6361011 gttttattttactagggacctattttaaaaagagagccgagccttctatttcacagggatggtcctg 6361077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3514667 - 3514604
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatg 63  Q
    ||||||||||||||||| ||| |||||||||||||||||  || ||||||||||||||||||||    
T  3514667 tacgttttattttactaagggtctattttaaaaagagagttgagcctcctatttcacagggatg 3514604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22503989 - 22504060
Alignment:
Q  1 tacgttttattttact-agggcctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    |||||||||||||||| |||| |||||||||||||||| |||| |||||||||||| ||||| | |||||||    
T  22503989 tacgttttattttactgagggtctattttaaaaagagaaccgagcctcctatttcatagggaagaccctgat 22504060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 29401387 - 29401450
Alignment:
Q  4 gttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||| ||||    
T  29401387 gttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacggcc 29401450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31258391 - 31258321
Alignment:
Q  1 tacgttttattttactaggg-cctatttt-aaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||| |||| |||||||    
T  31258391 tacgttttattttactaggggcctgtttttaaaaagagagccgagcctcctatttcacggggacggccctg 31258321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 12614531 - 12614481
Alignment:
Q  4 gttttattttactagg-gcctattttaaaaagagagccgaacctcctattt 53  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  12614531 gttttattttactagaagcctattttaaaaagagagtcgaacctcctattt 12614481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29149636 - 29149683
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctc 47  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||||    
T  29149636 tacgttttattttactagagacctattttaaaaagagagccgagcctc 29149683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29308268 - 29308217
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||| |||||||||| ||||||||||||  |||| |||||||    
T  29308268 gggcctattttaaatagagagccgagcctcctatttcatggggacggccctg 29308217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 31861250 - 31861301
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||| |||||| ||| |||||||||||| ||||| |||||||    
T  31861250 gggcctattttaaatagagagtcgagcctcctatttcatagggacggccctg 31861301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 350682 - 350716
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  350682 cctattttaaaaagagagtcgaacctcctatttca 350716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 3748381 - 3748331
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| || ||||||||||||| ||| |||| ||||||||||||    
T  3748381 ttttattttactcggacctattttaaaaatagaaccgagcctcctatttca 3748331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 1092856 - 1092799
Alignment:
Q  5 ttttattttactag-ggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||| ||| ||||||||||||| ||||| |||| |||||||||||| |||||    
T  1092856 ttttattttattagaggcctattttaaatagagaaccgagcctcctatttcataggga 1092799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1690517 - 1690481
Alignment:
Q  19 ggcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  1690517 ggcctattttaaatagagagccgagcctcctatttca 1690481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 6754470 - 6754510
Alignment:
Q  26 tttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    ||||||| || ||||||||||||||||||||||||| ||||    
T  6754470 tttaaaaggaaagccgaacctcctatttcacagggacggcc 6754510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37047028 - 37047097
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  37047028 tacgttttattttactaagggcctattttaaaaagagagccgaacctcctatttcacggggacggccctg 37047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13656457 - 13656512
Alignment:
Q  1 tacgttttattttactagggcctattttaaaaagagagccgaacctcctatttcac 56  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  13656457 tacgttttattttactatgacctattttaaaaagagagccgaacctcctatttcac 13656512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13474876 - 13474946
Alignment:
Q  1 tacgttttattttactag-ggcctattttaaaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||| ||||||||    
T  13474876 tacgttttattttactagaggcctattttaaaaagagagtcgagcctcctatttcacggggacggccctga 13474946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 13424114 - 13424178
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||    
T  13424114 ttttatcttactagagacctattttaaaaagagagccgagcctcctatttcacagggacggccct 13424178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 20976246 - 20976298
Alignment:
Q  19 ggcctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||    
T  20976246 ggcctattttaaatagagagccgagcctcctatttcacagggatgtccctgat 20976298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12661553 - 12661619
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    |||||||||||||||||  | |||||||||||||||||||||| ||||| |||||||||||| ||||    
T  12661553 tacgttttattttactaaagacctattttaaaaagagagccgagcctcccatttcacagggacggcc 12661619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 16515755 - 16515805
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  16515755 ttttattttactcgggcctattttaaaaatagaaccgaacctcctatttca 16515805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 26377587 - 26377525
Alignment:
Q  8 tattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||| |||||    
T  26377587 tattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggatgaccctg 26377525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 931618 - 931669
Alignment:
Q  5 ttttattttactag-ggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  931618 ttttgttttactagaggtctattttaaaaagagagccgaacctcctatttca 931669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 8379257 - 8379208
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  8379257 ttttattttactaga-cctattttaaaaagagagccgaatctcctatttca 8379208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26312232 - 26312299
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagggatggccc 67  Q
    |||||||||||||||||   ||||||||||||| ||||| ||| ||||||||||||| |||| |||||    
T  26312232 tacgttttattttactattagcctattttaaaatgagagtcgagcctcctatttcacggggacggccc 26312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 43511884 - 43511927
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||| |||||||||| |||||||||||| |||||    
T  43511884 gggcctattttaaatagagagccgagcctcctatttcataggga 43511927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36718447 - 36718378
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| ||  |||||||||||||||||  || |||||||||| |||| || |||||||    
T  36718447 tacgttttattttactatggatctattttaaaaagagagttgagcctcctattttacagagacggccctg 36718378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 3349527 - 3349487
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    ||||||||||| |||||||||| |||||||||||| |||||    
T  3349527 cctattttaaatagagagccgagcctcctatttcataggga 3349487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10591072 - 10591028
Alignment:
Q  22 ctattttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    |||||||||| |||||||||| |||||||||||| ||||| ||||    
T  10591072 ctattttaaatagagagccgagcctcctatttcatagggacggcc 10591028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 41612987 - 41613023
Alignment:
Q  19 ggcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||||||||||||||| || ||||||||||||    
T  41612987 ggcctattttaaaaagagagcagagcctcctatttca 41613023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 51109917 - 51109848
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  51109917 tacgttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 51109848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 6150971 - 6151037
Alignment:
Q  4 gttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||| |||||||    
T  6150971 gttttattttactaagggcttattttaaaaagagagtcgagcctcctatttcacagggacggccctg 6151037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17487097 - 17487036
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  17487097 tacgttttattttactaagggcctattttaaaaagagagtcgagcctcctatttcacgggga 17487036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 18127753 - 18127688
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  18127753 ttttattttactaaggacctattttgaaaagagaaccgaacctcctatttcacagggacggccctg 18127688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20905104 - 20905043
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  20905104 tacgttttatcttactagggacctattttaaaaagagagtcgagcctcctatttcacaggga 20905043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30004726 - 30004673
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctattt 53  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  30004726 tacgttttattttactatgggcctattttaaaaagagagccgagcctcctattt 30004673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30899906 - 30899971
Alignment:
Q  1 tacgttttattttacta-----gggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||     ||| ||||||||||||||||||||||||||||||||||||||||    
T  30899906 tacgttttattttactaattaagggtctattttaaaaagagagccgaacctcctatttcacaggga 30899971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 255 - 314
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagg 59  Q
    |||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||    
T  255 tacgttttattttactgggagcctattttaaaaagagaaccgagcctcctatttcacagg 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20470858 - 20470928
Alignment:
Q  1 tacgttttattttactaggg-cctatttt-aaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| ||| |||| |||||||||||||| ||||||||||||| |||| |||||||    
T  20470858 tacgttttattttactaggggcctgtttttaaaaagagagccgagcctcctatttcacggggacggccctg 20470928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48722184 - 48722127
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcaca 57  Q
    ||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||    
T  48722184 tacgttttattttactatggacctattttaaaaagagagtcgagcctcctatttcaca 48722127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29207911 - 29207839
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctgatg 72  Q
    ||||||||||||||||| || ||||||||| |||||||| ||| |||||||||||||||| | || |||||||    
T  29207911 tacgttttattttactatggacctattttagaaagagagtcgagcctcctatttcacaggaacggtcctgatg 29207839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 42740355 - 42740419
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||| |||||||||||||||| ||| |||| |||||||||||| ||| | |||||||    
T  42740355 ttttattttactggggcctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 42740419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33124459 - 33124400
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagg 59  Q
    ||||||||||||||||||| |||||||||||||||||||||||  || |||||| |||||    
T  33124459 tacgttttattttactaggagcctattttaaaaagagagccgagtcttctattttacagg 33124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28885489 - 28885434
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||||||   ||||||||||||||||| ||| ||||||||||||    
T  28885489 tacgttttattttactaggtatctattttaaaaagagagtcgagcctcctatttca 28885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 9777678 - 9777712
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||||| ||||||||||||||||    
T  9777678 cctattttaaaaagagagtcgaacctcctatttca 9777712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 37873570 - 37873520
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||| |||||||||||||||| |||  ||| ||||||||||||    
T  37873570 ttttattttactggggcctattttaaaaatagaatcgagcctcctatttca 37873520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 50552746 - 50552804
Alignment:
Q  4 gttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||| |||  ||||||||||||||||| || |||||||||| |||||||    
T  50552746 gttttattttactaagggtttattttaaaaagagagctgagcctcctattttacaggga 50552804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14084516 - 14084463
Alignment:
Q  1 tacgttttattttactag-ggcctattttaaaaagagagccgaacctcctattt 53  Q
    |||||||||||||| ||  || ||||||||||||||||||||| ||||||||||    
T  14084516 tacgttttattttattataggtctattttaaaaagagagccgagcctcctattt 14084463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26486189 - 26486141
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctattt 53  Q
    |||||||||||| ||||||||||| |||| ||| |||| ||||||||||    
T  26486189 ttttattttactcgggcctattttgaaaatagaaccgagcctcctattt 26486141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 31369308 - 31369276
Alignment:
Q  23 tattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||| ||||||||||||||||    
T  31369308 tattttaaaaagagagtcgaacctcctatttca 31369276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 44836540 - 44836492
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctattt 53  Q
    ||||||||||||  ||  |||||||||||||||| ||||||||||||||    
T  44836540 ttttattttacttaggtttattttaaaaagagagtcgaacctcctattt 44836492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 52055797 - 52055865
Alignment:
Q  1 tacgttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| |  ||  ||| ||||||||| ||| |||||||||||||||| | |||||||    
T  52055797 tacgttttattttactatgaacttattttaaaagagagtcgatcctcctatttcacaggaacggccctg 52055865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 28132549 - 28132484
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  28132549 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 28132484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21784598 - 21784531
Alignment:
Q  1 tacgttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    ||||||||||||||||| | |||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  21784598 tacgttttattttactatgacctattttaaaaagagagtcgaacctcctatttcagagggacggccct 21784531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8364418 - 8364483
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatggc 65  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  8364418 tacgttttattttactatgggcctattttaaaaagagagtcgagcctcctattccacagggatggc 8364483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 27729585 - 27729529
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggg 60  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27729585 ttttattttactagggacctattttaaaaagacagccgaacctcctatttcacaggg 27729529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6715684 - 6715755
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    ||||||||||||||||| ||  ||||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  6715684 tacgttttattttactaaggatctattttaaaaagagagccgagcctcctatttcacggggacggccctgat 6715755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 52654941 - 52654873
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||||||||||||||||| ||||||||||||||||||  || |||||||||||||||| | ||||||    
T  52654941 tacgttttattttactagggacctattttaaaaagagagttgagcctcctatttcacaggaacggccct 52654873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 46791513 - 46791454
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||||    
T  46791513 tacgttttattttactaggggcctattttaaa--gagagccgagcctcctatttcacaggga 46791454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 13401707 - 13401772
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||| || |||||||||||||||||| ||| |||||||||| ||||||| |||||||    
T  13401707 ttttattttactaaggacctattttaaaaagagagtcgagcctcctattttacagggacggccctg 13401772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 20762320 - 20762360
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  20762320 cctattttaaaaagaaagccgaacctcctatttcacaggga 20762360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 23164387 - 23164331
Alignment:
Q  4 gttttattttactag-ggcctattttaaaaagagagccgaacctcctatttcacagg 59  Q
    ||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||    
T  23164387 gttttattttactagaggcctattttaaaaagagagctgtgcctcctatttcacagg 23164331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 24252884 - 24252934
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||    
T  24252884 gggcctattttaaaaagagagacgaacctcctatttcac-gggacggccctg 24252934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 51939373 - 51939307
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    |||||| ||||||| |||| ||||||||||||||||||| ||| ||| |||||||||||||| ||||    
T  51939373 tacgttatattttaataggagcctattttaaaaagagagtcgagcctactatttcacagggacggcc 51939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25598901 - 25598848
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctattt 53  Q
    |||||||||||||||||  | |||||||||||||||||||||| ||||||||||    
T  25598901 tacgttttattttactaaagacctattttaaaaagagagccgagcctcctattt 25598848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27110689 - 27110636
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctattt 53  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||    
T  27110689 tacgttttattttactacgggtctattttaaaaagagagtcgagcctcctattt 27110636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 25525795 - 25525755
Alignment:
Q  30 aaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  25525795 aaaagagagccgaacctcctatttcacagggacgtccctga 25525755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 7767316 - 7767379
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||| ||||| |||||||||||||||| ||| |||| |||||||||||| ||| | ||||||    
T  7767316 ttttatcttacttgggcctattttaaaaatagaaccgagcctcctatttcataggaacggccct 7767379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 54430817 - 54430864
Alignment:
Q  23 tattttaaaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    ||||||||||||||||| ||||||||||||| ||||||| | ||||||    
T  54430817 tattttaaaaagagagctgaacctcctattttacagggacgaccctga 54430864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 27303437 - 27303487
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttca 55  Q
    ||||||||||||||  ||||||||||||| ||| |||| ||||||||||||    
T  27303437 ttttattttactagaacctattttaaaaatagaaccgagcctcctatttca 27303487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41096358 - 41096289
Alignment:
Q  1 tacgttttattttactagggc-ctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  41096358 tacgttttattttactaggggtctattttaaaaagagagccgagcctcctatttcacagggacggccctg 41096289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19367243 - 19367172
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    ||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||| |||||||||    
T  19367243 tacgttttattttactaggagcctattttaaaaagagagtcaagcctcctatttcacagggacggccctgat 19367172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 13020667 - 13020736
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||| |||||||    
T  13020667 tacgttttattttactaggggcctattttaaaaagagagccgaacctcctattctacggggacggccctg 13020736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26151566 - 26151497
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||| |||||||    
T  26151566 tacgttttattttactaggggcctattttaaaaagagagccaagcctcctatttcacggggacggccctg 26151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 7993880 - 7993932
Alignment:
Q  4 gttttattttactagg-gcctattttaaaaagagagccgaacctcctatttca 55  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7993880 gttttattttactaggtgcctattttaaaaagagagccgaacctcctatttca 7993932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4856238 - 4856299
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| ||||    
T  4856238 tacgttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacgggga 4856299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6530907 - 6530964
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcaca 57  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||    
T  6530907 tacgttttattttaataggagcctattttaaaaagagagccgagcctcctatttcaca 6530964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45619221 - 45619290
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||||| |||| |||||||    
T  45619221 tacgttttattttactaagggcctattttaaaaagagagtcgagcctcgtatttcacggggacggccctg 45619290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36481640 - 36481706
Alignment:
Q  1 tacgttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacagggatggcc 66  Q
    ||||||||||||||||||  | ||||||||||||||||||| |||||||||| ||||||||| ||||    
T  36481640 tacgttttattttactagaagactattttaaaaagagagccaaacctcctatgtcacagggacggcc 36481706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2064050 - 2064119
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| || ||||||||||||||||||  || |||||||||||||||| | |||||||    
T  2064050 tacgttttattttactacggacctattttaaaaagagagttgagcctcctatttcacaggaacggccctg 2064119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18676128 - 18676067
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||||||||| ||||||||| ||||||||| || |||| |||||||||||||    
T  18676128 tacgttttattttactaggggcctattttataaagagagctgagcctcttatttcacaggga 18676067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25222570 - 25222639
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| ||||||| |||||||| |||||| ||||| ||||||||| |||| |||||||    
T  25222570 tacgttttattttactaggggcctactttaaaaaaagagccaaaccttctatttcacggggacggccctg 25222639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34061684 - 34061627
Alignment:
Q  1 tacgttttattttactagggcct-attttaaaaagagagccgaacctcctatttcaca 57  Q
    |||||||||||||||||||| || |||||||||||||||| || ||||||||||||||    
T  34061684 tacgttttattttactaggggcttattttaaaaagagagctgagcctcctatttcaca 34061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45042636 - 45042705
Alignment:
Q  1 tacgttttattttacta-gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||  ||| ||||||||||||| |||||||    
T  45042636 tacgttttattttactatgggtctattttaaaaagtgagccgattctcatatttcacagggacggccctg 45042705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 17117446 - 17117395
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    |||||||||||||| |||||||||| |||||||||||| ||||| |||||||    
T  17117446 gggcctattttaaatagagagccgagcctcctatttcatagggacggccctg 17117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 39081645 - 39081708
Alignment:
Q  5 ttttattttactagggcctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||||||||| || ||||||||||||| ||| ||||||||||||||||| ||| | ||||||    
T  39081645 ttttattttactgggacctattttaaaaatagaaccgaacctcctatttcataggaacggccct 39081708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42759574 - 42759518
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcac 56  Q
    ||||||||||||||||| || |||||||||||||||| || || |||||||||||||    
T  42759574 tacgttttattttactatggacctattttaaaaagagggctgagcctcctatttcac 42759518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 1226068 - 1226017
Alignment:
Q  18 gggcctattttaaaaagagagccgaacctcctatttcacagggatggccctg 69  Q
    ||||||||||||||||||||| ||| |||||||||||| ||| | |||||||    
T  1226068 gggcctattttaaaaagagagtcgagcctcctatttcataggaacggccctg 1226017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 42411370 - 42411314
Alignment:
Q  4 gttttattttactagg-gcctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||| | |||||||||||||||||   ||||||||||||||||||||||    
T  42411370 gttttattttactatgagcctattttaaaaagagt--cgaacctcctatttcacaggga 42411314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15457768 - 15457818
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    ||||||||||| |||||||||| |||||||||||| ||||| ||| |||||    
T  15457768 cctattttaaatagagagccgagcctcctatttcatagggacggctctgat 15457818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 18915864 - 18915798
Alignment:
Q  5 ttttattttactagggcc-tattttaaaaagagagccgaacctcctatttcacagggatggccctga 70  Q
    |||||||||| | ||||| ||||||||| |||||||||| |||||||||| | ||||| ||||||||    
T  18915864 ttttattttattggggccctattttaaatagagagccgagcctcctattttatagggacggccctga 18915798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 21747029 - 21746983
Alignment:
Q  21 cctattttaaaaagagagccgaacctcctatttcacagggatggccc 67  Q
    ||||||||||| |||||||||| |||||||||||| ||||| |||||    
T  21747029 cctattttaaatagagagccgagcctcctatttcatagggacggccc 21746983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12269671 - 12269732
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||||||||||| ||||  |||||||||||||||||| |||  || ||||||||||||||    
T  12269671 tacgttttattttaataggaacctattttaaaaagagagtcgagtctactatttcacaggga 12269732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 18172757 - 18172694
Alignment:
Q  5 ttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacagggatggccct 68  Q
    |||||||||| | ||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||    
T  18172757 ttttattttattggggacctattttaaatagagagccgaacct-ctatttcatagggacggccct 18172694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1307 - 1378
Alignment:
Q  1 tacgttttattttactagggcct-attttaaaaagagagccgaacctcctatttcacagggatggccctgat 71  Q
    |||||||||||||||||||  || ||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  1307 tacgttttattttactaggaacttattttaaaaagagagccgagcctcctatttcacggggacggccctgat 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16952 - 16896
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcac 56  Q
    |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  16952 tacgttttattttattaggggcctattttaaaaagagagccgagcctcctatttcac 16896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16956 - 17017
Alignment:
Q  1 tacgttttattttactaggg-cctattttaaaaagagagccgaacctcctatttcacaggga 61  Q
    |||||| ||||||||||||| ||||||||||||||||||  || ||||||||||||| ||||    
T  16956 tacgttatattttactaggggcctattttaaaaagagagttgagcctcctatttcacgggga 17017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 45990 - 45938
Alignment:
Q  5 ttttattttactagggcct-attttaaaaagagagccgaacctcctatttcac 56  Q
    |||||||||||||||| || ||||||||||||||| ||| |||||||||||||    
T  45990 ttttattttactaggggcttattttaaaaagagagtcgagcctcctatttcac 45938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University