View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10105_low_3 (Length: 450)

Name: NF10105_low_3
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10105_low_3
NF10105_low_3
[»] chr4 (3 HSPs)
chr4 (167-323)||(6976585-6976741)
chr4 (367-450)||(6976735-6976807)
chr4 (171-225)||(6957129-6957183)
[»] chr5 (1 HSPs)
chr5 (273-301)||(6301467-6301495)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 6976585 - 6976741
Alignment:
Q  167 atgtaggttggatatcgtcatatagattgtgctcaatattatggcaatgaaaaggaggtgaggtgttatgtatcattagtcctatcaatgtcaatatcgt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6976585 atgtaggttggatatcgtcatatagattgtgctcaatattatggcaatgaaaaggaggtgaggtgttatgtatcattagtcctatcaatgtcaatatcgt 6976684  T
Q  267 gtctgatgtccgtgtttgtgtccatgcttcatagaatacatctgtccatcatctttt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6976685 gtctgatgtccgtgtttgtgtccatgcttcatagaatacatctgtccatcatgtttt 6976741  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 6976735 - 6976807
Alignment:
Q  367 atgttttagtaaagaaatattattcagtatgttgattgcagaatttgaatttgaaattgttacagttttgaattttgatactct 450  Q
    |||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||    
T  6976735 atgttttagtaaagaaatattattcagta-----------gaatttgaatttgaaattgttacagttttgaattttgatactct 6976807  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 6957129 - 6957183
Alignment:
Q  171 aggttggatatcgtcatatagattgtgctcaatattatggcaatgaaaaggaggt 225  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  6957129 aggttggttatcgtcatatagattgtgctcaaatttatggcaatgaaaaggaggt 6957183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 301
Target Start/End: Original strand, 6301467 - 6301495
Alignment:
Q  273 tgtccgtgtttgtgtccatgcttcataga 301  Q
    |||||||||||||||||||||||||||||    
T  6301467 tgtccgtgtttgtgtccatgcttcataga 6301495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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