View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10105_low_4 (Length: 437)

Name: NF10105_low_4
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10105_low_4
NF10105_low_4
[»] chr4 (2 HSPs)
chr4 (1-437)||(34752404-34752830)
chr4 (3-44)||(3318631-3318672)
[»] chr5 (1 HSPs)
chr5 (1-119)||(24531368-24531489)
[»] chr1 (5 HSPs)
chr1 (3-144)||(39589580-39589719)
chr1 (3-144)||(11922278-11922423)
chr1 (323-355)||(27664419-27664451)
chr1 (336-418)||(50298270-50298352)
chr1 (51-90)||(41096043-41096083)
[»] chr3 (5 HSPs)
chr3 (7-115)||(33802979-33803090)
chr3 (15-136)||(3603976-3604100)
chr3 (51-144)||(10885618-10885711)
chr3 (51-91)||(3454304-3454344)
chr3 (3-43)||(10885550-10885590)
[»] chr2 (3 HSPs)
chr2 (25-144)||(27102899-27103020)
chr2 (2-83)||(27102739-27102823)
chr2 (46-79)||(27102837-27102870)
[»] chr6 (1 HSPs)
chr6 (8-136)||(26834099-26834223)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 34752830 - 34752404
Alignment:
Q  1 cggagtacctaaagtaaaatcctttcatatgtaccactaatctacacattcaattgttttatgaataatattgtgagaaataatatatatgacgacctgc 100  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34752830 cggagtacctaaagtaaaatcctttcatatgtgctactaatctacacatacaattgttttatgaataatattgtgagaaataatatatatgacgacctgc 34752731  T
Q  101 aaaaaattgtgccacactggtttagtgtggccaggttcgcccctacttaaacggcactcatgttgaaacggatggagcatatgaaagaccaaaatgacat 200  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  34752730 aaaaaattgtgccacactggtttagtgtagccaggtccgcccctacttaaacggcactcatgttgaaacggatggagtatatgaaagaccaaaatgacgt 34752631  T
Q  201 gaagaaagaaaatggactgcataattactaaataccaatggttctcatattgtgattttgtttttgtttaatatgtaaattcttgtatgtttggattcgc 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34752630 gaagaaagaaaatggactgcataattactaaataccaatgattctcatattgggattttgtttttgtttaatatgtaaattcttgtatgtttggattcgc 34752531  T
Q  301 ggtgagttgggtagaatcatcgtgagccaccatgattttgcaaaaactacactttagtgcatcaatgaaatcagtgtcacagtgattttgtcaaatcgta 400  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34752530 ggtgagttgggtagaatcatcg----------tgattttgcaaaaactacactttagtgcatcaatgaaatcagtgtcacagtgattttgtcaaatcgta 34752441  T
Q  401 cgtgattttgatcatgcacaaaataaacaaagcattc 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  34752440 cgtgattttgatcatgcacaaaataaacaaagcattc 34752404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 3318631 - 3318672
Alignment:
Q  3 gagtacctaaagtaaaatcctttcatatgtaccactaatcta 44  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  3318631 gagtacctaaactaaaatccattcatatgtatcactaatcta 3318672  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 24531489 - 24531368
Alignment:
Q  1 cggagtacctaaagtaaaatcctttcatatgtaccactaatctaca---cattcaattgttttatgaataatattgtgagaaataatatatatgacgacc 97  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24531489 cggagtacctaaagtaaaatccattcatatgtaccactaatctactattcatacaatttttttatgaataatattgtgagaaataatatatatgacgacc 24531390  T
Q  98 tgcaaaaaattgtgccacactg 119  Q
    ||||||||||||||||||||||    
T  24531389 tgcaaaaaattgtgccacactg 24531368  T

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Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 39589580 - 39589719
Alignment:
Q  3 gagtacctaaagtaaaatcctttcatatgtaccactaatctacacattcaattgttttatgaataatattgtgagaaataatatatatgacgacctgc-- 100  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||    |||||||||| ||||||||||||| |||||||||||| ||| ||||||      
T  39589580 gagtacctaaagtaaaatcatttcatatgtaccactaatctataca----attgttttattaataatattgtgataaataatatataagacaacctgcaa 39589675  T
Q  101 aaaaaattgtgccacactggtttagtgtggccaggttcgcccct 144  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  39589676 aaaaaattgtgccacactggttttgtgaggccaggttcgcccct 39589719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 11922278 - 11922423
Alignment:
Q  3 gagtacctaaagtaaaatcctttcatatgtaccactaatctac---acattcaattgttttatgaataatattgtgagaaataatatatatgacgacctg 99  Q
    ||||||||| |||||||| | |||||||| ||||| |||||||   |||| ||||||||||| |||||||||||||| |||||||||||||||||| |||    
T  11922278 gagtacctagagtaaaattcattcatatgcaccacgaatctactatacatacaattgttttacgaataatattgtgacaaataatatatatgacgatctg 11922377  T
Q  100 c-aaaaaattgtgccacactggtttagtgtggccaggttcgcccct 144  Q
    | |||||| | |||||||||| ||| |||||| ||||| |||||||    
T  11922378 caaaaaaaatttgccacactgattttgtgtggtcaggtccgcccct 11922423  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 27664419 - 27664451
Alignment:
Q  323 tgagccaccatgattttgcaaaaactacacttt 355  Q
    |||||||||||||||||||||||||||||||||    
T  27664419 tgagccaccatgattttgcaaaaactacacttt 27664451  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 50298352 - 50298270
Alignment:
Q  336 ttttgcaaaaactacactttagtgcatcaatgaaatcagtgtcacagtgattttgtcaaatcgtacgtgattttgatcatgca 418  Q
    ||||| ||||| || ||||||| || |||| |||||||||||||| |||||||||| ||||  | ||||||||| | ||||||    
T  50298352 ttttgtaaaaagtatactttagagcttcaacgaaatcagtgtcacggtgattttgttaaattctccgtgattttaaacatgca 50298270  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 41096043 - 41096083
Alignment:
Q  51 caattgttttatgaataat-attgtgagaaataatatatat 90  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  41096043 caatttttttatgaataattattgtgagaaataatatatat 41096083  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 33802979 - 33803090
Alignment:
Q  7 acctaaagtaaaatcctttcatatgtaccactaatctac---acattcaattgttttatgaataatattgtgagaaataatatatatgacgacctgcaaa 103  Q
    |||||||||||||||| |||||||||||||||||| |||   |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33802979 acctaaagtaaaatccattcatatgtaccactaatatactatacatacaattgttttatgaataatattgtgagaaataatatatatgacgatctgcaaa 33803078  T
Q  104 aaattgtgccac 115  Q
    ||||||||||||    
T  33803079 aaattgtgccac 33803090  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 3604100 - 3603976
Alignment:
Q  15 taaaatcctttcatatgtaccactaatctac---acattcaattgttttatgaataatattgtgagaaataatatatatgacgacctgcaaaaaattgtg 111  Q
    |||||||  ||||||||||||||||||||||   |||| |||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||    
T  3604100 taaaatcgattcatatgtaccactaatctactatacatacaattgttttatgaataatactatgagaaatgatatatatcacgacctgcaaaaaattgtg 3604001  T
Q  112 ccacactggtttagtgtggccaggt 136  Q
    || |||| |||| ||| ||||||||    
T  3604000 cctcacttgttttgtgaggccaggt 3603976  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 10885618 - 10885711
Alignment:
Q  51 caattgttttatgaataatattgtgagaaataatatatatgacgacctgcaaaaaattgtgccacactggtttagtgtggccaggttcgcccct 144  Q
    ||||||||||||||||||||||||||||||||||||| |    ||||||||||||||||||| ||| || |||  || |||||||| |||||||    
T  10885618 caattgttttatgaataatattgtgagaaataatatacagtttgacctgcaaaaaattgtgctacattgattttctgaggccaggtccgcccct 10885711  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 3454344 - 3454304
Alignment:
Q  51 caattgttttatgaataatattgtgagaaataatatatatg 91  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  3454344 caattgttttacgaataatatcttgagaaataatatatatg 3454304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 10885550 - 10885590
Alignment:
Q  3 gagtacctaaagtaaaatcctttcatatgtaccactaatct 43  Q
    ||||||||||||||||||||  |||| ||||||||||||||    
T  10885550 gagtacctaaagtaaaatccaatcatgtgtaccactaatct 10885590  T

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Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 27102899 - 27103020
Alignment:
Q  25 tcatatgtaccacta--atctacacattcaattgttttatgaataatattgtgagaaataatatatatgacgacctgcaaaaaattgtgccacactggtt 122  Q
    |||||||||||||||  | ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||    
T  27102899 tcatatgtaccactatcaactatacatacaattgttttatgaataatattgtaagaaataatatatatgacgacctgcaaataattgtgccacactcgtt 27102998  T
Q  123 tagtgtggccaggttcgcccct 144  Q
    | ||| ||||||||||||||||    
T  27102999 ttgtgaggccaggttcgcccct 27103020  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 27102739 - 27102823
Alignment:
Q  2 ggagtacctaaagtaaaatcctttcatatgtaccactaat---ctacacattcaattgttttatgaataatattgtgagaaataa 83  Q
    ||||||||||||||||||||| ||||||||||||||||||   ||| | || ||||||||| |||||||||||||||| ||||||    
T  27102739 ggagtacctaaagtaaaatccattcatatgtaccactaatgtgctatatatacaattgtttaatgaataatattgtgaaaaataa 27102823  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 27102837 - 27102870
Alignment:
Q  46 acattcaattgttttatgaataatattgtgagaa 79  Q
    |||| |||||||||||||||||||||||||||||    
T  27102837 acatacaattgttttatgaataatattgtgagaa 27102870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 26834223 - 26834099
Alignment:
Q  8 cctaaagtaaaatcctttcatatgtaccactaatctacacattcaattgttttatgaataatattgtgagaaataatatatatgacgacctgcaaaaaat 107  Q
    ||||||||||||||  || |||||||||||||||||| |||    |||||||||||| || ||||||||||||||||||||| |||||||| ||||||||    
T  26834223 cctaaagtaaaatctattgatatgtaccactaatctataca----attgttttatgagtattattgtgagaaataatatataagacgacctccaaaaaat 26834128  T
Q  108 tgtgccacactggtttagtgtggccaggt 136  Q
    | |||||||||||||| ||| ||||||||    
T  26834127 tatgccacactggttttgtgaggccaggt 26834099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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