View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10105_low_5 (Length: 291)
Name: NF10105_low_5
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10105_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 21782925 - 21782761
Alignment:
| Q |
16 |
aacctcacgttgccgctgttaaataatctgaactgttggatagtggtttgatggctcatgttccgtgttttgaatttttatgcgatggaacgtgatttgt |
115 |
Q |
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| T |
21782925 |
aacctcacgttgccgtcgtcaagtaatctgaactgttggatagtggtctgatggctcatgttccgtcttttgaatttttatgcgatagaacgtgatttgt |
21782826 |
T |
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| Q |
116 |
ccgaactaattccaaatgaattgcttgtatcagagcttgacaagaaaatccaaatcaatttactg |
180 |
Q |
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| T |
21782825 |
ccgaacgtattccaaatgaatttcttgtatcagagcttgacaagaaaatccaaatcaatttactg |
21782761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 21782666 - 21782553
Alignment:
| Q |
179 |
tgattttgttt-atgtatgagatatgaaaatataagccttccagccattgatctgacaagagcatcaacttgtagtgtgtgtggtatcgacatgttagtg |
277 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||| ||| |
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| T |
21782666 |
tgattttgttttatgtatgagatatgaaaatataagccttccacccattgatctaacaagagcctcaactcatagtgtgtgtggtatcgacatgttggtg |
21782567 |
T |
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| Q |
278 |
tttgtgtcggagcc |
291 |
Q |
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| T |
21782566 |
tctgtgtcggagcc |
21782553 |
T |
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