View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10105_low_6 (Length: 280)
Name: NF10105_low_6
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10105_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 34396744 - 34396998
Alignment:
| Q |
13 |
atattctcctaataattgaatgatttttcactttatactttttatgaaagagtctaaaaagccactttactttgtttcttcaacacagtgatttgaatat |
112 |
Q |
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| T |
34396744 |
atattctcctaataattgaatgatttttcactttatactttttatgaaagagtctaaaaagccactttactttgtttcttcaacacagtgatttgaatat |
34396843 |
T |
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| Q |
113 |
ggcaccttcttactttcctctacgttgggagagcacaggagaccaatggtggtatgcaacacctattgatttagcagctgcaaatggtctctatgattta |
212 |
Q |
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| T |
34396844 |
ggcaccttcttactttcctctacgttgggagagcacaggagaccaatggtggtatgcaacacctattgatttagcagctgcaaatggtctctatgattta |
34396943 |
T |
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| Q |
213 |
gttgccgagcttctccatcatgatacaaatcttctcattaagctcacttctcttc |
267 |
Q |
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| T |
34396944 |
gttgctgagcttctccatcatgatacaaatcttctcattaagctcacttctcttc |
34396998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 38831965 - 38831886
Alignment:
| Q |
120 |
tcttactttcctctacgttgggagagcacaggagaccaatggtggtatgcaacacctattgatttagcagctgcaaatgg |
199 |
Q |
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| T |
38831965 |
tcttattttcctctccgttgggaaagcacaggacaacaatggtggtacgcatcaccaatcgatttagcagcagcaaatgg |
38831886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 7997501 - 7997452
Alignment:
| Q |
126 |
tttcctctacgttgggagagcacaggagaccaatggtggtatgcaacacc |
175 |
Q |
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| T |
7997501 |
tttcctcttcgttgggagagtaccggtgaccaatggtggtatgcatcacc |
7997452 |
T |
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