View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10105_low_9 (Length: 240)
Name: NF10105_low_9
Description: NF10105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10105_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 6970234 - 6970046
Alignment:
| Q |
35 |
aagaacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggc |
134 |
Q |
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| T |
6970234 |
aagaacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggc |
6970135 |
T |
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| Q |
135 |
cctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatgg |
223 |
Q |
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| T |
6970134 |
cctcctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatgg |
6970046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 6923873 - 6923698
Alignment:
| Q |
40 |
caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc |
139 |
Q |
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| T |
6923873 |
caatgacaaaagtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcc |
6923774 |
T |
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| Q |
140 |
taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgac |
215 |
Q |
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| T |
6923773 |
taaacctgaacctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgac |
6923698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 6917964 - 6918129
Alignment:
| Q |
50 |
agtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcctaaacctcaa |
149 |
Q |
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| T |
6917964 |
agtaggaagaatgaagttaggatcacaaggcatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcctaaacctgaa |
6918063 |
T |
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| Q |
150 |
actgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgac |
215 |
Q |
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| T |
6918064 |
cctgacatgattgctctcattcaccatgccatacaatctggtgtcacttttcttgatacttctgac |
6918129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 6922903 - 6922720
Alignment:
| Q |
40 |
caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc |
139 |
Q |
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| T |
6922903 |
caatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcc |
6922804 |
T |
|
| Q |
140 |
taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatgg |
223 |
Q |
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| T |
6922803 |
taaacctgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgacatttatgg |
6922720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 6955309 - 6955492
Alignment:
| Q |
40 |
caatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccctcc |
139 |
Q |
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| T |
6955309 |
caatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtgtccttacaaggacttggttgcatgagcatgtctgctttctatggtcctcc |
6955408 |
T |
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| Q |
140 |
taaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatgg |
223 |
Q |
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| T |
6955409 |
taaacctgaacctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgacatttatgg |
6955492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 6923425 - 6923611
Alignment:
| Q |
38 |
aacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccct |
137 |
Q |
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| T |
6923425 |
aacaatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcct |
6923524 |
T |
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| Q |
138 |
cctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatggt |
224 |
Q |
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| T |
6923525 |
cctaagcctgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatggt |
6923611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 6918722 - 6918537
Alignment:
| Q |
38 |
aacaatggcaacagtaggaagaatgaagttaggatcacaaggcatggaagtatccttacaaggacttggttgcatgagcatgtctgctttctatggccct |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
6918722 |
aacaatggcaacagtaggaagaatgaagttaggatcacaagggatggaagtatccttacaaggacttggttgcatgagcatgtcagctttctatggtcct |
6918623 |
T |
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| Q |
138 |
cctaaacctcaaactgacatgattgctctcatccaccatgccatacaatctggtgtcacttttcttgatacctctgacatatatgg |
223 |
Q |
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| T |
6918622 |
cctaagcctgaatctgatatgatttctctcatccaccatgctatacaatctggtgtcacttttcttgacacttctgatatttatgg |
6918537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6970298 - 6970262
Alignment:
| Q |
1 |
ttttgtttggcctttatacatagtactaggatagaag |
37 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
6970298 |
ttttgtttggcctttatacatagtcctaggatagaag |
6970262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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