View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10106_high_1 (Length: 451)
Name: NF10106_high_1
Description: NF10106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10106_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 3596683 - 3596279
Alignment:
| Q |
14 |
aatcaattggcaaagctattgaaaggaagcaacagaacaaaactaaaattgcaagagtgttaaaattggagcctttatcattaattgtaaaggttgcaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || | |||||||||| |
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| T |
3596683 |
aatcaattggcaaagctattgaaaggaagcaacagaacaaaactaaaattgtaagagtgttaaaattggagcatttatcattaaatggagaggttgcaaa |
3596584 |
T |
|
| Q |
114 |
aaagtagcagttgaactgtaaaccaaatgttgctatatagaaacgtctgatgcaaaacaaaaaagatagatagaa------aacctttgaatttatgagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3596583 |
aaagtagcagttgaactgtaaaccaaatgttgctatatagaaacgtctgatgcaaaacaaaaaagacagatagaaaattctaacctttgaatttatgagt |
3596484 |
T |
|
| Q |
208 |
cggattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattgga |
307 |
Q |
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|||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596483 |
cggattaatcaaagaaatcacacttataaacatacaccacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattgga |
3596384 |
T |
|
| Q |
308 |
tccaattaataagtatttttaaccttaagctatatagtattttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctaga |
407 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3596383 |
t----ttaa---------------ttaagctatatagtattttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatctaga |
3596303 |
T |
|
| Q |
408 |
aaatctttaaaatttaataagaat |
431 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
3596302 |
aaatctttaaaatttaatcagaat |
3596279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 150 - 309
Target Start/End: Complemental strand, 3573562 - 3573397
Alignment:
| Q |
150 |
atagaaacgtctgatgcaaaacaaaaaagatagatagaaaa------cctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatataca |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
3573562 |
atagaaacgtctgatgaaaaacaaaaaagatagatagaaaattctaaccttcgaatttatgaatcggattaatcaaagaaatcacacttgtaaatataca |
3573463 |
T |
|
| Q |
244 |
tgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
309 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573462 |
tgacggaggaatgaccaaacaaaggatattgttgaaatcgtcatcctcatcatcaagcattggatc |
3573397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 3586230 - 3586110
Alignment:
| Q |
189 |
aacctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| | || |||||||||| |||||| |
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| T |
3586230 |
aacctttgaatttatgagtcggattaatcaaagaaatcacactcgtaaatatacatgacggaggattgaccaaacaaaggatgttgttgaaatagtcatc |
3586131 |
T |
|
| Q |
289 |
ctcatcatcaagcattggatc |
309 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
3586130 |
ctcaacatcaagcattggatc |
3586110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 3595345 - 3595246
Alignment:
| Q |
210 |
gattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
309 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
3595345 |
gattaatcaaagaaatcacactcgtaaatatacatgacggtggaatgaccaaacaaaggatattgttgaaatcgtcatcctcatcgtcaagcattggatc |
3595246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 3568210 - 3568134
Alignment:
| Q |
233 |
gtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
309 |
Q |
| |
|
||||||||| ||| | || |||||||||||||| ||| |||||||||| |||||||| ||| ||||||| ||||| |
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|
| T |
3568210 |
gtaaatatatatggctgatgaatgaccaaacaaaagataatgttgaaatcatcatcctcctcaacaagcatcggatc |
3568134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 4375783 - 4375892
Alignment:
| Q |
328 |
aaccttaagctatatagtatt------ttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatt |
421 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
4375783 |
aaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtcaaattctaggtatttaatctagaaaatctttcaaatt |
4375882 |
T |
|
| Q |
422 |
taataagaat |
431 |
Q |
| |
|
|||| ||||| |
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|
| T |
4375883 |
taatcagaat |
4375892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 4388481 - 4388565
Alignment:
| Q |
347 |
ttttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaat |
431 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
4388481 |
ttttaacaagtaccaagatataaacatcgataacagtcaaattctaggtatttaatctagaaaatctttcaaatttaatcagaat |
4388565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 4383423 - 4383476
Alignment:
| Q |
348 |
tttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatc |
403 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
4383423 |
tttaacaagtaccaaga--taaacatcgataatagtcaaattctaggtatttaatc |
4383476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 5727019 - 5726968
Alignment:
| Q |
380 |
tagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaat |
431 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||| |
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|
| T |
5727019 |
tagtcaaattctatgtatttaatctagaaaatatttcaaattcaattagaat |
5726968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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