View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10106_high_3 (Length: 249)
Name: NF10106_high_3
Description: NF10106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10106_high_3 |
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| [»] scaffold0006 (3 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 131226 - 131480
Alignment:
| Q |
1 |
accttcaagtattcgctctctgtggttcgtggactctgtttccctcattataaaattcatattgcatatcattcctt-------------------taaa |
81 |
Q |
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| T |
131226 |
accttcaagtattcactctctgtggttcgtggactctgtttcccttattattaaattcatattgcatatcattccttcaagaatagaataaagttttaaa |
131325 |
T |
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| Q |
82 |
ttgatacttgcacctaaatcagacaaggcttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcgctctaaaattgtatta |
181 |
Q |
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| T |
131326 |
ttgatacttgcgcctaaatcagacaagacttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcactctaaaattgtatta |
131425 |
T |
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| Q |
182 |
atattatatttgaaaatgttgttgttgtttattgaattacatttgaaggttgtctgtg |
239 |
Q |
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| T |
131426 |
atattatatttgaaaa---tgttgttgtttattgaattactgttgaaagttgtctgtg |
131480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 160265 - 160304
Alignment:
| Q |
172 |
aattgtattaatattatatttgaaaatgttgttgttgttt |
211 |
Q |
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| T |
160265 |
aattgtattaatattatatttgaaaatattgttgttgttt |
160304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 161852 - 161892
Alignment:
| Q |
172 |
aattgtattaatattatatttgaaaatgttgttgttgttta |
212 |
Q |
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| T |
161852 |
aattgcattaatattataattgaaaatgttgttgttgttta |
161892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13602569 - 13602823
Alignment:
| Q |
1 |
accttcaagtattcgctctctgtggttcgtggactctgtttccctcattataaaattcatattgcatatcattcctt-------------------taaa |
81 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |
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| T |
13602569 |
accttcaagtattcactctctgtggttcgtggactctgtttcccttattattaaattcatattgcatatcattccttcaagaatagaataaagttttaaa |
13602668 |
T |
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| Q |
82 |
ttgatacttgcacctaaatcagacaaggcttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcgctctaaaattgtatta |
181 |
Q |
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| T |
13602669 |
ttgatacttgcgcctaaatcagacaagacttttcaaaataagtatggactgtgaaatttttgagtatgattgcattagcttgcactctaaaattgtatta |
13602768 |
T |
|
| Q |
182 |
atattatatttgaaaatgttgttgttgtttattgaattacatttgaaggttgtctgtg |
239 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |
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| T |
13602769 |
atattatatttgaaaa---tgttgttgtttattgaattactgttgaaagttgtctgtg |
13602823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 13572751 - 13572791
Alignment:
| Q |
172 |
aattgtattaatattatatttgaaaatgttgttgttgttta |
212 |
Q |
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||||| |||||| |||||||||||||||||||||||||||| |
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| T |
13572751 |
aattgcattaattttatatttgaaaatgttgttgttgttta |
13572791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 13492274 - 13492313
Alignment:
| Q |
172 |
aattgtattaatattatatttgaaaatgttgttgttgttt |
211 |
Q |
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| T |
13492274 |
aattgcattaatattatatttgaaaatgttgtttttgttt |
13492313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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